GRMZM2G013065 (Zea mays)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GRMZM2G013065 T54005_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G013065_P01 RRM 9 77
GRMZM2G013065_P01 RRM 109 178

Links

Other RRM family RBPs
Other Zea mays RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB02G005620 Sorghum bicolor Sb02g005620 N 0.964
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.964
SB02G005670 Sorghum bicolor Sb02g005670 N 0.964
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.942
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.921
SB02G037690 Sorghum bicolor Sb02g037690 N 0.914
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.914
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.899
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.899
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.899
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.857
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.843
29608.m000212 Ricinus communis 29608.m000212 N 0.842
30048.m000319 Ricinus communis 30048.m000319 N 0.835
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.827
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.827
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.827
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.827
PK13457.1 Cannabis sativa PK13457.1 N 0.820
PK25912.1 Cannabis sativa PK25912.1 N 0.820
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.820
27613.m000635 Ricinus communis 27613.m000635 N 0.820
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.813
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.813
ppa005132m Prunus persica ppa005132m N 0.813
ppa005119m Prunus persica ppa005119m N 0.813
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.813
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.806
ppa005122m Prunus persica ppa005122m N 0.806
MDP0000204698 Malus x domestica MDP0000204698 N 0.806
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.806
MDP0000320618 Malus x domestica MDP0000320618 N 0.806
ppa004834m Prunus persica ppa004834m N 0.806
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.806
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.806
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.800
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.799
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.799
mgf012147m Mimulus guttatus mgf012147m N 0.799
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.799
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.799
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.799
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.799
MDP0000642684 Malus x domestica MDP0000642684 N 0.799
MDP0000907782 Malus x domestica MDP0000907782 N 0.799
MDP0000609551 Malus x domestica MDP0000609551 N 0.799
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.799
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.799
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.799
MDP0000188788 Malus x domestica MDP0000188788 N 0.799
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.799
mgf004139m Mimulus guttatus mgf004139m N 0.791
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.791
mgf009385m Mimulus guttatus mgf009385m N 0.791
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.791
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.791
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.791
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.784
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.784
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.784
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.784
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.784
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.777
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.773
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.770
mgf009486m Mimulus guttatus mgf009486m N 0.764
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.763
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.763
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.763
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.741
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.719
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.712