CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G013065
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G013065
T54005_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G013065_P01
RRM
9
77
LFVGGISWETSEDRLREYFGRFGEVTEAVIMRDRSTGRARGFGFVVFADAAVAERVTMDKHTIDGRMVE
GRMZM2G013065_P01
RRM
109
178
IFVGGLPSSVTEADFRRYFEQFGIITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKSFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
72 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.964
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.964
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.964
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.942
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.921
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.914
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.914
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.899
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.899
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.899
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.857
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.843
29608.m000212
Ricinus communis
29608.m000212
N
0.842
30048.m000319
Ricinus communis
30048.m000319
N
0.835
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.827
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.827
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.827
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.827
PK13457.1
Cannabis sativa
PK13457.1
N
0.820
PK25912.1
Cannabis sativa
PK25912.1
N
0.820
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.820
27613.m000635
Ricinus communis
27613.m000635
N
0.820
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.813
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.813
ppa005132m
Prunus persica
ppa005132m
N
0.813
ppa005119m
Prunus persica
ppa005119m
N
0.813
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.813
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.806
ppa005122m
Prunus persica
ppa005122m
N
0.806
MDP0000204698
Malus x domestica
MDP0000204698
N
0.806
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.806
MDP0000320618
Malus x domestica
MDP0000320618
N
0.806
ppa004834m
Prunus persica
ppa004834m
N
0.806
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.806
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.806
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.800
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.799
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.799
mgf012147m
Mimulus guttatus
mgf012147m
N
0.799
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.799
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.799
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.799
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.799
MDP0000642684
Malus x domestica
MDP0000642684
N
0.799
MDP0000907782
Malus x domestica
MDP0000907782
N
0.799
MDP0000609551
Malus x domestica
MDP0000609551
N
0.799
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.799
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.799
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.799
MDP0000188788
Malus x domestica
MDP0000188788
N
0.799
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.799
mgf004139m
Mimulus guttatus
mgf004139m
N
0.791
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.791
mgf009385m
Mimulus guttatus
mgf009385m
N
0.791
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.791
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.791
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.791
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.784
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.784
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.784
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.784
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.784
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.777
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.773
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.770
mgf009486m
Mimulus guttatus
mgf009486m
N
0.764
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.763
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.763
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.763
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.741
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.719
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.712