SRSF5 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000005949 T35782_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.736
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.736
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.736
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.729
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000005369 RRM 6 68
ENSCPOP00000005369 RRM 110 175

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

133 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AGAP000965 Anopheles gambiae AGAP000965 I 0.000
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.000
Bm1_43995 Brugia malayi Bm1_43995 N 0.000
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.000
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.000
Rbp9 Drosophila melanogaster FBgn0010263 D 0.000
GH13638 Drosophila grimshawi FBgn0121114 I 0.000
GL26299 Drosophila persimilis FBgn0163881 I 0.000
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.000