CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SRSF5
(
Cavia porcellus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCPOG00000005949
T35782_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SRSF5
M357_0.6
Homo sapiens
Sequence logo not available
UGGGAGCRGUYRGCUCGY
SELEX
Cook et al.(2011)
985_9037021
0.736
SRSF5
M356_0.6
Homo sapiens
Sequence logo not available
UGGGAGCRGUYRGCUCGY
SELEX
Cook et al.(2011)
984_9037021
0.736
SRSF5
M355_0.6
Homo sapiens
Sequence logo not available
UGGGAGCRGUYRGCUCGY
SELEX
Cook et al.(2011)
983_9037021
0.736
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.729
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.729
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000005369
RRM
6
68
VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVT
ENSCPOP00000005369
RRM
110
175
LIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIK
Links
Other
RRM
family RBPs
Other
Cavia porcellus
RBPs
133 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100070669
Equus caballus
ENSECAG00000023932
N
0.000
SRSF6
Loxodonta africana
ENSLAFG00000006682
N
0.000
SRSF6
Meleagris gallopavo
ENSMGAG00000000888
N
0.000
SRSF6
Myotis lucifugus
ENSMLUG00000016618
N
0.000
SRSF6
Ornithorhynchus anatinus
ENSOANG00000008955
N
0.000
SRSF6
Ochotona princeps
ENSOPRG00000002017
N
0.000
XR_023431.1
Pan troglodytes
ENSPTRG00000013506
N
0.000
SRSF6
Sorex araneus
ENSSARG00000001602
N
0.000
SRSF6
Spermophilus tridecemlineatus
ENSSTOG00000010866
N
0.000
SRSF6
Tursiops truncatus
ENSTTRG00000015410
N
0.000