SRSF5 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000005949 T35782_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.736
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.736
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.736
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.729
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000005369 RRM 6 68
ENSCPOP00000005369 RRM 110 175

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

133 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100070669 Equus caballus ENSECAG00000023932 N 0.000
SRSF6 Loxodonta africana ENSLAFG00000006682 N 0.000
SRSF6 Meleagris gallopavo ENSMGAG00000000888 N 0.000
SRSF6 Myotis lucifugus ENSMLUG00000016618 N 0.000
SRSF6 Ornithorhynchus anatinus ENSOANG00000008955 N 0.000
SRSF6 Ochotona princeps ENSOPRG00000002017 N 0.000
XR_023431.1 Pan troglodytes ENSPTRG00000013506 N 0.000
SRSF6 Sorex araneus ENSSARG00000001602 N 0.000
SRSF6 Spermophilus tridecemlineatus ENSSTOG00000010866 N 0.000
SRSF6 Tursiops truncatus ENSTTRG00000015410 N 0.000