hnrnpa1 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000036675 T36131_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.850
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.850
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.850
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.829
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000053266 RRM 33 102
ENSDARP00000053266 RRM 124 193

Links

Other RRM family RBPs
Other Danio rerio RBPs

221 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.814
AAA49742 Xenopus laevis AAA49742 I 0.814
AAA49948 Xenopus laevis AAA49948 I 0.000
AAA49949 Xenopus laevis AAA49949 I 0.807
AAA49950 Xenopus laevis AAA49950 I 0.796
AAB59951 Xenopus laevis AAB59951 I 0.000
AAH43750 Xenopus laevis AAH43750 I 0.000
AAH45260 Xenopus laevis AAH45260 I 0.829
AAH46692 Xenopus laevis AAH46692 I 0.000
AAH72090 Xenopus laevis AAH72090 I 0.829
AAI06633 Xenopus laevis AAI06633 I 0.000
AAI69881 Xenopus laevis AAI69881 I 0.796
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.000
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.850
CBF67555 Xenopus laevis CBF67555 I 0.814
CBF67577 Xenopus laevis CBF67577 I 0.000
CBF67578 Xenopus laevis CBF67578 I 0.796
CBF67672 Xenopus laevis CBF67672 I 0.829
CBU92428 Xenopus laevis CBU92428 I 0.814
CBU92450 Xenopus laevis CBU92450 I 0.000
CBU92451 Xenopus laevis CBU92451 I 0.796
CBU92546 Xenopus laevis CBU92546 I 0.829
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.857
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.800
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.000
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.850
LOC516616 Bos taurus ENSBTAG00000002284 I 0.000
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.000
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.000
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.000
LOC781499 Bos taurus ENSBTAG00000021580 I 0.794
LOC785445 Bos taurus ENSBTAG00000025621 I 0.809
LOC538435 Bos taurus ENSBTAG00000038680 I 0.000
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.000
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.746
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.000
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.732
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.000
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.754
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.807
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.734
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.000
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.800
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.850
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.807
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.755
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.713
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.000
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.701
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.836
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.782
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.000
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.794
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.717
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.775
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.728
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.000
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.739
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.768
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.769
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.754
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.821
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.748
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.000
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.773
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.782
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.829
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.843
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.794
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.000
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.000
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.745
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.829
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.793
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.780
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.850
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.850
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.000
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.794
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.829
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.829
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.800
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.850
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.794
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.794
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.821
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.779
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.850
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.000
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.794
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.000
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.757
LOC100068539 Equus caballus ENSECAG00000000782 I 0.000
LOC100054206 Equus caballus ENSECAG00000006699 I 0.768
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.850
LOC100066794 Equus caballus ENSECAG00000023237 I 0.793
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.800
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.836
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.000
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.850
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.807
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.000
HNRNPA1 Homo sapiens ENSG00000135486 D 0.850
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.829
HNRNPA3 Homo sapiens ENSG00000170144 I 0.794
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.850
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.857
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.793
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.000
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.850
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.794
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.000
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.836
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.729
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.000
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.843
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.857
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.814
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.794
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.000
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.844
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.793
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.000
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.850
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.775
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.836
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.794
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.000
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.794
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.000
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.000
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.780
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.843
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.829
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.703
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.000
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.850
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.703
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.000
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.843
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.829
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.000
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.794
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.746
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.000
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.829
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.850
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.794
Gm8991 Mus musculus ENSMUSG00000059179 I 0.800
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.000
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.787
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.836
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.850
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.829
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.836
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.843
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.821
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.836
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.843
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.850
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.000
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.836
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.000
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.836
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.000
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.843
HNRNPA2B1 Ochotona princeps ENSOPRG00000011698 I 0.000
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.864
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.746
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.752
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.000
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.814
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.850
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.794
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.000
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.850
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.850
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.850
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.850
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.000
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.794
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.794
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.807
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.000
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.000
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.787
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.794
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.821
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.779
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.796
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.850
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.786
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.821
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.757
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.850
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.000
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.000
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.000
ENSSSCG00000013607 Sus scrofa ENSSSCG00000013607 I 0.000
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.000
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.794
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.000
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.000
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.000
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.000
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.850
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.801
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.000
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.793
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.814
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.821
HNRNPA2B1 Tarsius syrichta ENSTSYG00000008124 N 0.000
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.000
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.850
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.794
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.000
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.807
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.000
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.836
P17130 Xenopus laevis P17130 I 0.814
P51968 Xenopus laevis P51968 I 0.807
P51989 Xenopus laevis P51989 I 0.000
P51990 Xenopus laevis P51990 I 0.000
P51992 Xenopus laevis P51992 I 0.796