CPEB4 (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000006077 T41593_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.985
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.934
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.863
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000005458 RRM 474 540
ENSSTOP00000005458 RRM 582 651

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

152 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
111676 Helobdella robusta 111676 I 0.784
79994 Helobdella robusta 79994 I 0.721
AAEL012065 Aedes aegypti AAEL012065 I 0.700
ADH10187 Xenopus laevis ADH10187 I 0.985
AGAP002296 Anopheles gambiae AGAP002296 I 0.791
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.870
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.949
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.934
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.985
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.891
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.898
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.949
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.927
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.985
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.985
CPEB3 Bos taurus ENSBTAG00000015450 I 0.949
CPEB2 Bos taurus ENSBTAG00000019847 I 0.934
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.949
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.934
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.978
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.942
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.934
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.823
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.949
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.934
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.985
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.934
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.985
CPEB2 Danio rerio ENSDARG00000052604 I 0.818
cpeb3 Danio rerio ENSDARG00000060103 I 0.935
CPEB4 Danio rerio ENSDARG00000060495 I 0.971
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.934
CPEB3 Equus caballus ENSECAG00000000077 I 0.942
CPEB2 Equus caballus ENSECAG00000008722 I 0.934
LOC100058918 Equus caballus ENSECAG00000016921 I 0.985
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.985
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.942
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.877
CPEB3 Homo sapiens ENSG00000107864 I 0.949
CPEB4 Homo sapiens ENSG00000113742 D 0.985
CPEB2 Homo sapiens ENSG00000137449 D 0.934
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.927
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.891
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.964
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.971
CPEB3 Gallus gallus ENSGALG00000006912 I 0.949
CPEB4 Gallus gallus ENSGALG00000014074 I 0.971
CPEB2 Gallus gallus ENSGALG00000014516 I 0.934
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.934
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.985
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.949
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.934
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.985
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.949
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.934
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.942
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.971
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.934
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.949
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.949
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.752
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.985
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.934
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.949
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.978
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.934
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.985
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.949
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.985
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.949
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.934
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.927
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.971
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.942
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.934
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.985
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.949
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.730
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.985
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.934
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.985
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.934
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.971
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.964
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.905
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.985
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.854
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.949
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.934
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.985
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.949
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.934
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.985
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.883
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.898
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.985
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.889
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.949
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.985
CPEB3 Sorex araneus ENSSARG00000001994 I 0.942
CPEB2 Sorex araneus ENSSARG00000010559 I 0.839
CPEB4 Sorex araneus ENSSARG00000013389 I 0.971
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.934
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.949
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.793
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.985
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.949
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.985
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.949
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.934
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.928
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.971
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.905
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.752
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.971
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.971
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.928
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.898
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.985
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.715
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.934
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.796
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.752
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.839
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.891
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.949
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.769
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.898
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.839
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.854
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.861
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.883
GF10140 Drosophila ananassae FBgn0087181 I 0.891
GG15051 Drosophila erecta FBgn0107305 I 0.883
GH16131 Drosophila grimshawi FBgn0123602 I 0.883
GI12400 Drosophila mojavensis FBgn0135157 I 0.883
GL20808 Drosophila persimilis FBgn0158403 I 0.883
GJ12289 Drosophila virilis FBgn0199538 I 0.883
GK17460 Drosophila willistoni FBgn0219459 I 0.883
GE21274 Drosophila yakuba FBgn0238542 I 0.883
orb2 Drosophila melanogaster FBgn0262573 D 0.883
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.920
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.791
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.927
ISCW010113 Ixodes scapularis ISCW010113 I 0.891
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.906
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.801
PHUM335520 Pediculus humanus PHUM335520 I 0.891
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.763
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.899
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.856
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.899