CPEB4 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000018221 T42173_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.737
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000021387 RRM 480 515
ENSTNIP00000021387 RRM 588 657

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

118 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
111676 Helobdella robusta 111676 I 0.000
69117 Helobdella robusta 69117 N 0.000
79994 Helobdella robusta 79994 I 0.000
AAEL012065 Aedes aegypti AAEL012065 I 0.000
ADH10187 Xenopus laevis ADH10187 I 0.757
AGAP002296 Anopheles gambiae AGAP002296 I 0.000
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.000
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.737
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.715
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.757
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.000
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.706
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.737
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.715
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.757
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.757
CPEB3 Bos taurus ENSBTAG00000015450 I 0.737
CPEB2 Bos taurus ENSBTAG00000019847 I 0.715
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.737
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.715
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.752
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.732
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.715
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.000
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.737
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.715
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.757
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.715
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.757
CPEB2 Danio rerio ENSDARG00000052604 I 0.000
cpeb3 Danio rerio ENSDARG00000060103 I 0.732
CPEB4 Danio rerio ENSDARG00000060495 I 0.772
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.715
CPEB3 Equus caballus ENSECAG00000000077 I 0.732
CPEB2 Equus caballus ENSECAG00000008722 I 0.715
LOC100058918 Equus caballus ENSECAG00000016921 I 0.757
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.757
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.737
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.000
CPEB3 Homo sapiens ENSG00000107864 I 0.737
CPEB4 Homo sapiens ENSG00000113742 D 0.757
CPEB2 Homo sapiens ENSG00000137449 D 0.715
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.730
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.708
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.772
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.772
CPEB3 Gallus gallus ENSGALG00000006912 I 0.737
CPEB4 Gallus gallus ENSGALG00000014074 I 0.746
CPEB2 Gallus gallus ENSGALG00000014516 I 0.715
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.715
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.757
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.737
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.715
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.757
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.737
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.715
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.737
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.746
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.715
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.737
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.737
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.944
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.757
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.715
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.737
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.750
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.715
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.757
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.737
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.757
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.737
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.715
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.715
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.746
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.732
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.715
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.757
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.737
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.881
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.757
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.715
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.757
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.730
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.772
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.772
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.708
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.757
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.000
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.737
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.715
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.757
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.737
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.715
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.757
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.000
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.000
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.757
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.000
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.737
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.757
CPEB3 Sorex araneus ENSSARG00000001994 I 0.732
CPEB2 Sorex araneus ENSSARG00000010559 I 0.000
CPEB4 Sorex araneus ENSSARG00000013389 I 0.743
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.715
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.737
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.000
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.752
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.757
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.737
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.757
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.737
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.715
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.732
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.765
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.708
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.772
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.765
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.732
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.708
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.757
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.715
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.000
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.944
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.000
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.000
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.737
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.000
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.000
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.727
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.000
GF10140 Drosophila ananassae FBgn0087181 I 0.000
GG15051 Drosophila erecta FBgn0107305 I 0.000
GH16131 Drosophila grimshawi FBgn0123602 I 0.000
GI12400 Drosophila mojavensis FBgn0135157 I 0.000
GL20808 Drosophila persimilis FBgn0158403 I 0.000
GJ12289 Drosophila virilis FBgn0199538 I 0.000
GK17460 Drosophila willistoni FBgn0219459 I 0.000
GE21274 Drosophila yakuba FBgn0238542 I 0.000
orb2 Drosophila melanogaster FBgn0262573 D 0.000
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.708
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.000
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.715
ISCW010113 Ixodes scapularis ISCW010113 I 0.000
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.715
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.000
PHUM335520 Pediculus humanus PHUM335520 I 0.000
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.000
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.703
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.713
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.703