CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPC
(
Tursiops truncatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTTRG00000016055
T42680_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPC
M025_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00025
1.000
HNRNPCL1
M158_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00167
0.906
RALY
M150_0.6
Homo sapiens
UUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00159
0.781
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTTRP00000015213
RRM
18
81
VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLD
Links
Other
RRM
family RBPs
Other
Tursiops truncatus
RBPs
130 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29647.m002009
Ricinus communis
29647.m002009
N
0.000
29726.m004014
Ricinus communis
29726.m004014
N
0.000
AT2G47850
Arabidopsis thaliana
AT2G47850-TAIR-G
N
0.000
AT3G06410
Arabidopsis thaliana
AT3G06410-TAIR-G
N
0.000
AT5G18550
Arabidopsis thaliana
AT5G18550-TAIR-G
N
0.000
BRADI2G09340
Brachypodium distachyon
BRADI2G09340
N
0.000
BRADI2G09350
Brachypodium distachyon
BRADI2G09350
N
0.000
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.000
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.000
cassava43930.valid.m1
Manihot esculenta
cassava43930.valid.m1
N
0.000
XM_002884531.1
Arabidopsis lyrata
fgenesh2_kg.3__645__AT3G06410.1
N
0.000
XM_002871776.1
Arabidopsis lyrata
fgenesh2_kg.6__1872__AT5G18550.1
N
0.000
Glyma02g17260.1
Glycine max
Glyma02g17260.1
N
0.000
Glyma07g37980.1
Glycine max
Glyma07g37980.1
N
0.000
Glyma10g02550.1
Glycine max
Glyma10g02550.1
N
0.000
Glyma17g02720.1
Glycine max
Glyma17g02720.1
N
0.000
GRMZM2G036837
Zea mays
GRMZM2G036837
N
0.000
GRMZM2G069009
Zea mays
GRMZM2G069009
N
0.000
GRMZM2G086994
Zea mays
GRMZM2G086994
N
0.000
GRMZM2G475017
Zea mays
GRMZM2G475017
N
0.000
GSVIVG00010980001
Vitis vinifera
GSVIVG00010980001
N
0.000
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.000
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.000
LjSGA_005717.2.1
Lotus japonicus
LjSGA_005717.2.1
N
0.000
LjSGA_080419.1
Lotus japonicus
LjSGA_080419.1
N
0.000
LOC_Os01g15350
Oryza sativa
LOC_Os01g15350
N
0.000
LOC_Os01g15460
Oryza sativa
LOC_Os01g15460
N
0.000
MDP0000172887
Malus x domestica
MDP0000172887
N
0.000
MDP0000207283
Malus x domestica
MDP0000207283
N
0.000
MDP0000319251
Malus x domestica
MDP0000319251
N
0.000
MDP0000535412
Malus x domestica
MDP0000535412
N
0.000
mgf002685m
Mimulus guttatus
mgf002685m
N
0.000
mgf008934m
Mimulus guttatus
mgf008934m
N
0.000
mgf026218m
Mimulus guttatus
mgf026218m
N
0.000
PK29685.1
Cannabis sativa
PK29685.1
N
0.000
POPTR_0008s22740
Populus trichocarpa
POPTR_0008s22740
N
0.000
POPTR_0010s02310
Populus trichocarpa
POPTR_0010s02310
N
0.000
ppa005056m
Prunus persica
ppa005056m
N
0.000
ppa005229m
Prunus persica
ppa005229m
N
0.000
SB03G009920
Sorghum bicolor
Sb03g009920
N
0.000
SB03G009930
Sorghum bicolor
Sb03g009930
N
0.000
XM_002880280.1
Arabidopsis lyrata
scaffold_403761.1
N
0.000