HNRNPC (Tursiops truncatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTTRG00000016055 T42680_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		1.000
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.906
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000015213 RRM 18 81

Links

Other RRM family RBPs
Other Tursiops truncatus RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29647.m002009 Ricinus communis 29647.m002009 N 0.000
29726.m004014 Ricinus communis 29726.m004014 N 0.000
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.000
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.000
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.000
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.000
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.000
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.000
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.000
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.000
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.000
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.000
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.000
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.000
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.000
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.000
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.000
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.000
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.000
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.000
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.000
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.000
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.000
LjSGA_005717.2.1 Lotus japonicus LjSGA_005717.2.1 N 0.000
LjSGA_080419.1 Lotus japonicus LjSGA_080419.1 N 0.000
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.000
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.000
MDP0000172887 Malus x domestica MDP0000172887 N 0.000
MDP0000207283 Malus x domestica MDP0000207283 N 0.000
MDP0000319251 Malus x domestica MDP0000319251 N 0.000
MDP0000535412 Malus x domestica MDP0000535412 N 0.000
mgf002685m Mimulus guttatus mgf002685m N 0.000
mgf008934m Mimulus guttatus mgf008934m N 0.000
mgf026218m Mimulus guttatus mgf026218m N 0.000
PK29685.1 Cannabis sativa PK29685.1 N 0.000
POPTR_0008s22740 Populus trichocarpa POPTR_0008s22740 N 0.000
POPTR_0010s02310 Populus trichocarpa POPTR_0010s02310 N 0.000
ppa005056m Prunus persica ppa005056m N 0.000
ppa005229m Prunus persica ppa005229m N 0.000
SB03G009920 Sorghum bicolor Sb03g009920 N 0.000
SB03G009930 Sorghum bicolor Sb03g009930 N 0.000
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.000