ppa009716m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa009716m T58414_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.868
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa009716m RRM 32 99

Links

Other RRM family RBPs
Other Prunus persica RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30076.m004440 Ricinus communis 30076.m004440 I 0.838
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.739
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.797
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.735
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.706
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.838
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.824
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.809
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.809
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.926
CU179634_3 Medicago truncatula CU179634_3 I 0.853
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.912
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.809
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.783
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.897
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.868
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.735
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.882
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.797
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.824
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.812
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.824
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.000
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.809
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.809
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.824
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.824
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.824
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.809
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.735
MDP0000118777 Malus x domestica MDP0000118777 I 0.768
MDP0000134468 Malus x domestica MDP0000134468 I 0.794
MDP0000138486 Malus x domestica MDP0000138486 I 0.809
MDP0000284454 Malus x domestica MDP0000284454 I 0.912
MDP0000488395 Malus x domestica MDP0000488395 I 0.824
MDP0000548950 Malus x domestica MDP0000548950 I 0.824
MDP0000744398 Malus x domestica MDP0000744398 I 0.824
MDP0000857317 Malus x domestica MDP0000857317 I 0.768
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.000
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.868
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.809
mgf017214m Mimulus guttatus mgf017214m I 0.897
PK14266.1 Cannabis sativa PK14266.1 I 0.809
PK15672.1 Cannabis sativa PK15672.1 I 0.783
PK17691.1 Cannabis sativa PK17691.1 N 0.000
PK21213.1 Cannabis sativa PK21213.1 I 0.868
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.912
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.824
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.912
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.838
A9PDC5_POPTR Populus trichocarpa POPTR_0015s00790 N 0.000
ppa009964m Prunus persica ppa009964m I 0.824
ppa016222m Prunus persica ppa016222m I 0.809
ppa018603m Prunus persica ppa018603m I 0.783
ppa018926m Prunus persica ppa018926m I 0.783
ppa019392m Prunus persica ppa019392m I 0.783
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.765