ppa019392m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa019392m T58485_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa019392m RRM 18 86

Links

Other RRM family RBPs
Other Prunus persica RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa018926m Prunus persica ppa018926m I 1.000
PK15672.1 Cannabis sativa PK15672.1 I 0.928
MDP0000134468 Malus x domestica MDP0000134468 I 0.928
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.913
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.899
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.899
MDP0000233609 Malus x domestica MDP0000233609 I 0.884
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.884
29908.m006046 Ricinus communis 29908.m006046 I 0.884
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.884
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.884
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.884
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.870
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.870
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.870
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.870
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.870
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.855
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.841
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.812
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.797
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.797
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.797
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.797
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.797
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.797
mgf017214m Mimulus guttatus mgf017214m I 0.797
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.783
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.783
PK21213.1 Cannabis sativa PK21213.1 I 0.783
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.783
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.783
ppa016222m Prunus persica ppa016222m I 0.783
ppa009964m Prunus persica ppa009964m I 0.783
30076.m004440 Ricinus communis 30076.m004440 I 0.783
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.783
ppa009716m Prunus persica ppa009716m I 0.783
MDP0000548950 Malus x domestica MDP0000548950 I 0.768
CU179634_3 Medicago truncatula CU179634_3 I 0.768
MDP0000138486 Malus x domestica MDP0000138486 I 0.768
MDP0000744398 Malus x domestica MDP0000744398 I 0.768
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.768
MDP0000284454 Malus x domestica MDP0000284454 I 0.768
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.768
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.768
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.768
MDP0000488395 Malus x domestica MDP0000488395 I 0.768
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.768
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.768
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.768
MDP0000857317 Malus x domestica MDP0000857317 I 0.754
MDP0000118777 Malus x domestica MDP0000118777 I 0.754
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.754
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.754
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.754
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.754
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.754
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.754
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.754
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.754
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.754
PK14266.1 Cannabis sativa PK14266.1 I 0.754
MDP0000184420 Malus x domestica MDP0000184420 I 0.739
ppa018603m Prunus persica ppa018603m I 0.739
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.725
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.725
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.725
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.710
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.710