Glyma07g05590.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma07g05590.1 T52696_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma07g05590.1 RRM 20 88

Links

Other RRM family RBPs
Other Glycine max RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.971
MDP0000744398 Malus x domestica MDP0000744398 I 0.913
MDP0000548950 Malus x domestica MDP0000548950 I 0.913
30076.m004440 Ricinus communis 30076.m004440 I 0.913
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.913
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.913
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.913
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.913
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.899
MDP0000488395 Malus x domestica MDP0000488395 I 0.899
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.899
ppa016222m Prunus persica ppa016222m I 0.899
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.899
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.884
PK14266.1 Cannabis sativa PK14266.1 I 0.884
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.884
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.870
ppa018603m Prunus persica ppa018603m I 0.870
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.855
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.855
MDP0000857317 Malus x domestica MDP0000857317 I 0.841
MDP0000118777 Malus x domestica MDP0000118777 I 0.841
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.812
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.797
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.797
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.797
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.797
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.797
mgf017214m Mimulus guttatus mgf017214m I 0.797
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.797
ppa009716m Prunus persica ppa009716m I 0.797
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.783
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.783
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.783
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.783
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.783
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.783
PK21213.1 Cannabis sativa PK21213.1 I 0.783
PK15672.1 Cannabis sativa PK15672.1 I 0.783
ppa019392m Prunus persica ppa019392m I 0.768
ppa018926m Prunus persica ppa018926m I 0.768
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.768
MDP0000134468 Malus x domestica MDP0000134468 I 0.768
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.768
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.768
CU179634_3 Medicago truncatula CU179634_3 I 0.768
MDP0000138486 Malus x domestica MDP0000138486 I 0.754
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.754
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.754
ppa009964m Prunus persica ppa009964m I 0.754
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.754
MDP0000233609 Malus x domestica MDP0000233609 I 0.754
MDP0000184420 Malus x domestica MDP0000184420 I 0.739
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.739
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.739
MDP0000284454 Malus x domestica MDP0000284454 I 0.739
29908.m006046 Ricinus communis 29908.m006046 I 0.739
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.739
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.725
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.725
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.725
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.725
PK17691.1 Cannabis sativa PK17691.1 N 0.725
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.725
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.725
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.710
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.710
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.710
30170.m013735 Ricinus communis 30170.m013735 I 0.710
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.710