XP_001180940.1 (Strongylocentrotus purpuratus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 XP_001180940.1 T58874_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.791
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.791
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_001180940.1 RRM 6 68
XP_001180940.1 RRM 131 196

Links

Other RRM family RBPs
Other Strongylocentrotus purpuratus RBPs

138 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62194 Helobdella robusta 62194 I 0.760
AAH44085 Xenopus laevis AAH44085 I 0.744
AAH44265 Xenopus laevis AAH44265 I 0.752
AAH46668 Xenopus laevis AAH46668 I 0.767
AAH71160 Xenopus laevis AAH71160 I 0.760
AGAP004592 Anopheles gambiae AGAP004592 I 0.806
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.783
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.760
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.791
Aqu1.218342 Amphimedon queenslandica Aqu1.218342 N 0.783
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.791
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.806
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.806
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.736
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.736
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.767
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.791
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.760
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.760
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.791
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.760
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.729
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.729
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.791
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.713
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.760
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.752
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.721
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.760
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.791
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.713
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.705
srsf6a Danio rerio ENSDARG00000013729 I 0.729
srsf6b Danio rerio ENSDARG00000016783 I 0.721
srsf5b Danio rerio ENSDARG00000027734 I 0.736
srsf5a Danio rerio ENSDARG00000029818 I 0.783
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.791
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.752
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.752
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.791
LOC100053264 Equus caballus ENSECAG00000026873 I 0.760
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.791
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.736
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.752
SRSF5 Felis catus ENSFCAG00000008848 I 0.760
SRSF5 Homo sapiens ENSG00000100650 D 0.760
SRSF4 Homo sapiens ENSG00000116350 I 0.791
SRSF6 Homo sapiens ENSG00000124193 I 0.752
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.760
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.729
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.760
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.744
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.775
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.752
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.760
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.791
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.752
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.744
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.791
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.775
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.744
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.760
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.744
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.791
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.760
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.744
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.791
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.767
Srsf6 Mus musculus ENSMUSG00000016921 I 0.752
Srsf5 Mus musculus ENSMUSG00000021134 I 0.760
Srsf4 Mus musculus ENSMUSG00000028911 I 0.791
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.744
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.791
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.760
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.760
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.760
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.783
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.721
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.775
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.760
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.791
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.744
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.791
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.760
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.752
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.791
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.760
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.752
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.760
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.752
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.791
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.760
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.791
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.729
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.744
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.767
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.783
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.767
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.760
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.767
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.744
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.744
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.752
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.767
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.744
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.760
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.783
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.791
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.760
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.760
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.760
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.744
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.760
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.744
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.798
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.806
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.860
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.798
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.814
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.729
e_gw1.4.397.1 Trichoplax adhaerens e_gw1.4.397.1 N 0.708
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.798
B52 Drosophila melanogaster FBgn0004587 D 0.791
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.783
GF17608 Drosophila ananassae FBgn0094626 I 0.791
GH18528 Drosophila grimshawi FBgn0125995 I 0.783
GI22065 Drosophila mojavensis FBgn0144794 I 0.783
GL23543 Drosophila persimilis FBgn0161133 I 0.783
GJ24113 Drosophila virilis FBgn0211197 I 0.783
GK13948 Drosophila willistoni FBgn0215954 I 0.791
ISCW010321 Ixodes scapularis ISCW010321 I 0.791
ISCW010322 Ixodes scapularis ISCW010322 I 0.705
ISCW014220 Ixodes scapularis ISCW014220 I 0.721
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.775
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.775
PHUM290500 Pediculus humanus PHUM290500 I 0.736
Ppa-rsp-1 Pristionchus pacificus PPA18140 N 0.729
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 1.000