XP_001180940.1 (Strongylocentrotus purpuratus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 XP_001180940.1 T58874_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.791
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.791
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_001180940.1 RRM 6 68
XP_001180940.1 RRM 131 196

Links

Other RRM family RBPs
Other Strongylocentrotus purpuratus RBPs

138 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29633.m000882 Ricinus communis 29633.m000882 N 0.000
CCR2 Arabidopsis thaliana AT2G21660-TAIR-G N 0.000
GR-RBP8 Arabidopsis thaliana AT4G39260-TAIR-G N 0.000
BGIOSIBCE012432 Oryza indica BGIOSIBCE012432 N 0.000
BGIOSIBCE037445 Oryza indica BGIOSIBCE037445 N 0.000
BRADI4G00870 Brachypodium distachyon BRADI4G00870 N 0.000
BRADI4G00940 Brachypodium distachyon BRADI4G00940 N 0.000
cassava22279.valid.m1 Manihot esculenta cassava22279.valid.m1 N 0.000
cassava22280.valid.m1 Manihot esculenta cassava22280.valid.m1 N 0.000
cassava22281.valid.m1 Manihot esculenta cassava22281.valid.m1 N 0.000
cassava6967.valid.m1 Manihot esculenta cassava6967.valid.m1 N 0.000
chr1.CM0178.490.nc Lotus japonicus chr1.CM0178.490.nc N 0.000
chr3.CM0091.630.nd Lotus japonicus chr3.CM0091.630.nd N 0.000
chr3.CM0091.670.nd Lotus japonicus chr3.CM0091.670.nd N 0.000
Cucsa.109630 Cucumis sativus Cucsa.109630 N 0.000
fgenesh1_pg.scaffold_42000167 Physcomitrella patens fgenesh1_pg.scaffold_42000167 N 0.000
XM_002880346.1 Arabidopsis lyrata fgenesh2_kg.4__94__AT2G21660.2 N 0.000
XM_002868851.1 Arabidopsis lyrata fgenesh2_kg.7__133__AT4G39260.1 N 0.000
Glyma06g01470.1 Glycine max Glyma06g01470.1 N 0.000
Glyma11g12480.1 Glycine max Glyma11g12480.1 N 0.000
Glyma11g12490.1 Glycine max Glyma11g12490.1 N 0.000
GRMZM2G080603 Zea mays GRMZM2G080603 N 0.000
GRMZM2G165901 Zea mays GRMZM2G165901 N 0.000
GSVIVG00031973001 Vitis vinifera GSVIVG00031973001 N 0.000
gw1.123.70.1 Physcomitrella patens gw1.123.70.1 N 0.000
gw1.136.87.1 Physcomitrella patens gw1.136.87.1 N 0.000
LOC_Os03g46770 Oryza sativa LOC_Os03g46770 N 0.000
LOC_Os12g43600 Oryza sativa LOC_Os12g43600 N 0.000
MDP0000260339 Malus x domestica MDP0000260339 N 0.000
MDP0000797759 Malus x domestica MDP0000797759 N 0.000
Medtr4g095640 Medicago truncatula Medtr4g095640 N 0.000
Medtr4g095700 Medicago truncatula Medtr4g095700 N 0.000
Medtr4g095740 Medicago truncatula Medtr4g095740 N 0.000
mgf000685m Mimulus guttatus mgf000685m N 0.000
mgf001195m Mimulus guttatus mgf001195m N 0.000
A9P8Z7_POPTR Populus trichocarpa POPTR_0004s16260 N 0.000
A9P8S6_POPTR Populus trichocarpa POPTR_0009s11920 N 0.000
GRP2_SORBI Sorghum bicolor Sb01g012300 N 0.000
SB08G022740 Sorghum bicolor Sb08g022740 N 0.000