CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XP_001180940.1
(
Strongylocentrotus purpuratus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
XP_001180940.1
T58874_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.791
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.791
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_001180940.1
RRM
6
68
VYVGRLSYQARERDVERFFRGFGRIREINLKNGFGFVEFEDYRDADDAVYELNGKELVGERVI
XP_001180940.1
RRM
131
196
IVVENLSSRVSWQDLKDYMRQAGEVTFADAHKQHKNEGIVEFATYSDMKNAVEKLDGTEINGRRIK
Links
Other
RRM
family RBPs
Other
Strongylocentrotus purpuratus
RBPs
138 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29633.m000882
Ricinus communis
29633.m000882
N
0.000
CCR2
Arabidopsis thaliana
AT2G21660-TAIR-G
N
0.000
GR-RBP8
Arabidopsis thaliana
AT4G39260-TAIR-G
N
0.000
BGIOSIBCE012432
Oryza indica
BGIOSIBCE012432
N
0.000
BGIOSIBCE037445
Oryza indica
BGIOSIBCE037445
N
0.000
BRADI4G00870
Brachypodium distachyon
BRADI4G00870
N
0.000
BRADI4G00940
Brachypodium distachyon
BRADI4G00940
N
0.000
cassava22279.valid.m1
Manihot esculenta
cassava22279.valid.m1
N
0.000
cassava22280.valid.m1
Manihot esculenta
cassava22280.valid.m1
N
0.000
cassava22281.valid.m1
Manihot esculenta
cassava22281.valid.m1
N
0.000
cassava6967.valid.m1
Manihot esculenta
cassava6967.valid.m1
N
0.000
chr1.CM0178.490.nc
Lotus japonicus
chr1.CM0178.490.nc
N
0.000
chr3.CM0091.630.nd
Lotus japonicus
chr3.CM0091.630.nd
N
0.000
chr3.CM0091.670.nd
Lotus japonicus
chr3.CM0091.670.nd
N
0.000
Cucsa.109630
Cucumis sativus
Cucsa.109630
N
0.000
fgenesh1_pg.scaffold_42000167
Physcomitrella patens
fgenesh1_pg.scaffold_42000167
N
0.000
XM_002880346.1
Arabidopsis lyrata
fgenesh2_kg.4__94__AT2G21660.2
N
0.000
XM_002868851.1
Arabidopsis lyrata
fgenesh2_kg.7__133__AT4G39260.1
N
0.000
Glyma06g01470.1
Glycine max
Glyma06g01470.1
N
0.000
Glyma11g12480.1
Glycine max
Glyma11g12480.1
N
0.000
Glyma11g12490.1
Glycine max
Glyma11g12490.1
N
0.000
GRMZM2G080603
Zea mays
GRMZM2G080603
N
0.000
GRMZM2G165901
Zea mays
GRMZM2G165901
N
0.000
GSVIVG00031973001
Vitis vinifera
GSVIVG00031973001
N
0.000
gw1.123.70.1
Physcomitrella patens
gw1.123.70.1
N
0.000
gw1.136.87.1
Physcomitrella patens
gw1.136.87.1
N
0.000
LOC_Os03g46770
Oryza sativa
LOC_Os03g46770
N
0.000
LOC_Os12g43600
Oryza sativa
LOC_Os12g43600
N
0.000
MDP0000260339
Malus x domestica
MDP0000260339
N
0.000
MDP0000797759
Malus x domestica
MDP0000797759
N
0.000
Medtr4g095640
Medicago truncatula
Medtr4g095640
N
0.000
Medtr4g095700
Medicago truncatula
Medtr4g095700
N
0.000
Medtr4g095740
Medicago truncatula
Medtr4g095740
N
0.000
mgf000685m
Mimulus guttatus
mgf000685m
N
0.000
mgf001195m
Mimulus guttatus
mgf001195m
N
0.000
A9P8Z7_POPTR
Populus trichocarpa
POPTR_0004s16260
N
0.000
A9P8S6_POPTR
Populus trichocarpa
POPTR_0009s11920
N
0.000
GRP2_SORBI
Sorghum bicolor
Sb01g012300
N
0.000
SB08G022740
Sorghum bicolor
Sb08g022740
N
0.000