AAH99348 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH99348 T59598_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6
Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2
0.995
ELAVL4
M314_0.6
Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1
0.995
ELAVL4
M313_0.6
Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595
0.995
ELAVL2
M330_0.6
Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035
0.953
ELAVL2
M329_0.6
Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035
0.953
ELAVL2
M328_0.6
Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264
0.953
ELAVL1
M112_0.6
Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117
0.774
ELAVL1
M232_0.6
Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274
0.774
ELAVL1
M108_0.6
Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112
0.774
ELAVL1
M127_0.6
Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136
0.774
ELAVL1
M031_0.6
Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032
0.774
ELAVL1
M327_0.6
Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256
0.774
Rbp9
M124_0.6
Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132
0.731
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH99348 RRM 42 112
AAH99348 RRM 128 196
AAH99348 RRM 279 349

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

191 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity
Action
143653 Helobdella robusta 143653 N 0.000
AAA96942 Xenopus laevis AAA96942 I 0.769
AAA96944 Xenopus laevis AAA96944 I 0.915
AAH86269 Xenopus laevis AAH86269 I 0.764
AAI16460 Xenopus laevis AAI16460 I 0.731
AAI69769 Xenopus laevis AAI69769 I 0.915
AGAP000965 Anopheles gambiae AGAP000965 I 0.750
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.778
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.911
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.774
Ame_R011921 Ailuropoda melanoleuca Ame_R011921 I 0.000
BGIBMGA012436 Bombyx mori BGIBMGA012436 I 0.000
CAA59430 Xenopus laevis CAA59430 I 0.948
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.723
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.746
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.723
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.746
MEX3A Anolis carolinensis ENSACAG00000003739 N 0.000
MEX3C Anolis carolinensis ENSACAG00000010265 I 0.000
MEX3B Anolis carolinensis ENSACAG00000011072 I 0.000
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.911
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.769
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.911
Q2YDI4_BOVIN Bos taurus ENSBTAG00000014886 I 0.000
MEX3D Bos taurus ENSBTAG00000044028 I 0.000
MEX3B Canis familiaris ENSCAFG00000013759 I 0.000
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.911
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.774
MEX3D Canis familiaris ENSCAFG00000023712 I 0.000
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.807
ENSCPOG00000022816 Cavia porcellus ENSCPOG00000022816 I 0.792
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.728
elavl3 Danio rerio ENSDARG00000014420 I 0.911
hug Danio rerio ENSDARG00000016405 I 0.793
elavl1 Danio rerio ENSDARG00000038695 I 0.775
elavl2 Danio rerio ENSDARG00000040732 I 0.929
MEX3C Danio rerio ENSDARG00000068971 I 0.000
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.773
ELAVL2 Dasypus novemcinctus ENSDNOG00000016605 I 0.774
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.897
Mex3c Dipodomys ordii ENSDORG00000007962 I 0.000
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.774
LOC100063974 Equus caballus ENSECAG00000007279 N 0.000
LOC100060819 Equus caballus ENSECAG00000019459 I 0.769
LOC100056901 Equus caballus ENSECAG00000020594 I 0.831
ELAVL2 Erinaceus europaeus ENSEEUG00000008733 I 0.774
MEX3C Erinaceus europaeus ENSEEUG00000010864 I 0.000
MEX3C Echinops telfairi ENSETEG00000003647 I 0.000
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.953
ELAVL4 Echinops telfairi ENSETEG00000013779 I 0.840
MEX3D Felis catus ENSFCAG00000002615 I 0.000
ELAVL1 Felis catus ENSFCAG00000014947 I 0.774
ELAVL1 Homo sapiens ENSG00000066044 D 0.774
ELAVL3 Homo sapiens ENSG00000196361 I 0.911
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.772
MEX3A Gasterosteus aculeatus ENSGACG00000013282 N 0.000
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.728
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.911
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.934
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.769
MEX3D Gallus gallus ENSGALG00000001106 I 0.000
MEX3A Gallus gallus ENSGALG00000014016 N 0.000
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.938
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.953
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.774
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.911
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.774
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.911
MEX3B Loxodonta africana ENSLAFG00000006027 I 0.000
MEX3A Loxodonta africana ENSLAFG00000009220 N 0.000
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.770
MEX3C Macropus eugenii ENSMEUG00000015929 I 0.000
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.915
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.769
MEX3D Meleagris gallopavo ENSMGAG00000002325 I 0.000
MEX3A Meleagris gallopavo ENSMGAG00000015563 N 0.000
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.751
MEX3C Microcebus murinus ENSMICG00000005815 I 0.000
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.774
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.778
MEX3A Myotis lucifugus ENSMLUG00000010185 N 0.000
MEX3C Myotis lucifugus ENSMLUG00000012585 I 0.000
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.948
MEX3D Myotis lucifugus ENSMLUG00000017018 N 0.000
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.774
ENSMODG00000003850 Monodelphis domestica ENSMODG00000003850 I 0.752
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.774
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.878
MEX3B Monodelphis domestica ENSMODG00000019387 I 0.000
Elavl3 Mus musculus ENSMUSG00000003410 I 0.901
Elavl1 Mus musculus ENSMUSG00000040028 I 0.774
Mex3b Mus musculus ENSMUSG00000057706 I 0.000
MEX3C Ornithorhynchus anatinus ENSOANG00000008116 I 0.000
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.831
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.953
MEX3B Oryctolagus cuniculus ENSOCUG00000011603 I 0.000
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.783
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.911
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.774
ELAVL2 Otolemur garnettii ENSOGAG00000016228 I 0.802
MEX3B Otolemur garnettii ENSOGAG00000016362 I 0.000
MEX3D Ochotona princeps ENSOPRG00000008708 I 0.000
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.783
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.723
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.934
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.902
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.783
MEX3D Procavia capensis ENSPCAG00000010972 I 0.000
MEX3B Procavia capensis ENSPCAG00000014150 I 0.000
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.869
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.774
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.774
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.892
MEX3A Pan troglodytes ENSPTRG00000030373 N 0.000
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.892
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.911
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.774
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.901
D3ZFL6_RAT Rattus norvegicus ENSRNOG00000025142 I 0.000
ELAVL3 Sorex araneus ENSSARG00000005949 I 0.761
MEX3B Sorex araneus ENSSARG00000006007 I 0.000
MEX3C Sorex araneus ENSSARG00000006940 I 0.000
MEX3A Sorex araneus ENSSARG00000009868 N 0.000
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.778
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.911
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.808
ELAVL2 Spermophilus tridecemlineatus ENSSTOG00000007792 I 0.732
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.759
ELAVL3 Tupaia belangeri ENSTBEG00000006133 I 0.775
ELAVL4 Tupaia belangeri ENSTBEG00000011730 I 0.840
MEX3C Tupaia belangeri ENSTBEG00000014438 I 0.000
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.723
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.769
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.924
MEX3A Taeniopygia guttata ENSTGUG00000003692 N 0.000
MEX3A Tetraodon nigroviridis ENSTNIG00000004473 N 0.000
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.934
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.902
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.761
MEX3B Takifugu rubripes ENSTRUG00000000367 I 0.000
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.751
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.732
MEX3A Takifugu rubripes ENSTRUG00000007796 N 0.000
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.920
MEX3D Takifugu rubripes ENSTRUG00000007986 I 0.000
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.911
MEX3C Takifugu rubripes ENSTRUG00000011888 I 0.000
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.774
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.906
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.911
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.948
MEX3C Vicugna pacos ENSVPAG00000003137 I 0.000
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.769
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.796
mex3a Xenopus tropicalis ENSXETG00000012704 N 0.000
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.907
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.728
e_gw1.3.1475.1 Trichoplax adhaerens e_gw1.3.1475.1 I 0.000
e_gw1.312.50.1 Capitella teleta e_gw1.312.50.1 I 0.000
Rbp9 Drosophila melanogaster FBgn0010263 D 0.745
GF14992 Drosophila ananassae FBgn0092017 I 0.727
GG24901 Drosophila erecta FBgn0117030 I 0.727
GH13638 Drosophila grimshawi FBgn0121114 I 0.736
GI11879 Drosophila mojavensis FBgn0134637 I 0.727
GL26299 Drosophila persimilis FBgn0163881 I 0.741
GM18380 Drosophila sechellia FBgn0173287 I 0.727
GJ13991 Drosophila virilis FBgn0201209 I 0.727
GK14865 Drosophila willistoni FBgn0216870 I 0.727
GE18193 Drosophila yakuba FBgn0235624 I 0.727
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.727
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.746
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.759
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.779
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.778
PHUM418100 Pediculus humanus PHUM418100 I 0.000
Q1JQ73 Xenopus laevis Q1JQ73 I 0.731
Q5U259 Xenopus laevis Q5U259 I 0.764
Q91584 Xenopus laevis Q91584 I 0.915