MDP0000202971 (Malus x domestica)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		MDP0000202971 T00224_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000202971 CCCH ZF 62 75
MDP0000202971 CCCH ZF 116 141
MDP0000202971 KH 185 247
MDP0000202971 CCCH ZF 280 305

Links

Other CCCH ZF,KH family RBPs
Other Malus x domestica RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009316m Prunus persica ppa009316m N 0.886
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.743
mgf010445m Mimulus guttatus mgf010445m N 0.729
mgf003025m Mimulus guttatus mgf003025m N 0.707
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.757
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.807
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.757
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.800
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.800
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.718
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.716
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.786
ppa009199m Prunus persica ppa009199m N 0.786
MDP0000275117 Malus x domestica MDP0000275117 N 0.829
MDP0000217837 Malus x domestica MDP0000217837 N 0.879
MDP0000176924 Malus x domestica MDP0000176924 N 1.000
MDP0000130160 Malus x domestica MDP0000130160 N 0.805
MDP0000120315 Malus x domestica MDP0000120315 N 0.817
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.807
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.768
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.814
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.836
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.814
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.725
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.752
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.739
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.738
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.727
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.711
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.763
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.803
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.789
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.789
SB04G006450 Sorghum bicolor Sb04g006450 N 0.714
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.721
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.821
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.773
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.850
27843.m000162 Ricinus communis 27843.m000162 N 0.800
27843.m000161 Ricinus communis 27843.m000161 N 0.800
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.718
SB06G032000 Sorghum bicolor Sb06g032000 N 0.730
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.739