SB05G001540 (Sorghum bicolor)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		Sb05g001540 T00765_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb05g001540.1 CCCH ZF 150 172
Sb05g001540.1 RRM 258 317

Links

Other CCCH ZF,RRM family RBPs
Other Sorghum bicolor RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.756
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.807
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.807
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.928
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.807
mgf014647m Mimulus guttatus mgf014647m N 0.819
mgf002273m Mimulus guttatus mgf002273m N 0.800
mgf000973m Mimulus guttatus mgf000973m N 0.800
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.855
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.855
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.736
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.855
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.855
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.736
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.702
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.702
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.819
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.976
ppa023263m Prunus persica ppa023263m N 0.843
ppa002413m Prunus persica ppa002413m N 0.810
ppa002383m Prunus persica ppa002383m N 0.721
MDP0000259773 Malus x domestica MDP0000259773 N 0.807
MDP0000256775 Malus x domestica MDP0000256775 N 0.807
MDP0000243086 Malus x domestica MDP0000243086 N 0.843
MDP0000220601 Malus x domestica MDP0000220601 N 0.831
MDP0000164538 Malus x domestica MDP0000164538 N 0.721
MDP0000120462 Malus x domestica MDP0000120462 N 0.798
MDP0000120231 Malus x domestica MDP0000120231 N 0.810
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.855
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.733
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.736
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.843
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.774
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.750
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.843
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.733
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.831
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.819
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.807
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.831
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.798
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.855
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.770
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.843
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.795
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.807
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.819
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.807
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.831
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.770
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.795
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.843
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.843
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.843
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.843
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.843
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.726
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.821
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.821
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.756
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.793
30169.m006472 Ricinus communis 30169.m006472 N 0.733
30169.m006471 Ricinus communis 30169.m006471 N 0.810
SB08G001980 Sorghum bicolor Sb08g001980 N 0.928
SB02G043180 Sorghum bicolor Sb02g043180 N 0.819
SB01G036490 Sorghum bicolor Sb01g036490 N 0.807
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.774
PK18074.1 Cannabis sativa PK18074.1 N 0.721