143355 (Helobdella robusta)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 143355 T20554_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
143355 KH 1 42
143355 KH 80 139

Links

Other KH family RBPs
Other Helobdella robusta RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ELAVL1 Homo sapiens ENSG00000066044 D 0.000
Rbp9 Drosophila melanogaster FBgn0010263 D 0.000
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.000
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.000
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.000
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.000
ELAVL2 Spermophilus tridecemlineatus ENSSTOG00000007792 I 0.000
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.000
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.000
ELAVL2 Otolemur garnettii ENSOGAG00000016228 I 0.000
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.000
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.000
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.000
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.000
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.000
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.000
ELAVL3 Sorex araneus ENSSARG00000005949 I 0.000
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.000
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.000
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.000
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.000
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.000
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.000
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.000
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.000
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.000
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.000
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.000
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.000
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.000
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.000
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.000
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.000
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.000
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.000
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.000
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.000
Elavl1 Mus musculus ENSMUSG00000040028 I 0.000
Elavl3 Mus musculus ENSMUSG00000003410 I 0.000
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.000
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.000
ENSMODG00000003850 Monodelphis domestica ENSMODG00000003850 I 0.000
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.000
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.000
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.000
Q91584 Xenopus laevis Q91584 I 0.000
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.000
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.000
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.000
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.000
GE18193 Drosophila yakuba FBgn0235624 I 0.000
GK14865 Drosophila willistoni FBgn0216870 I 0.000
GJ13991 Drosophila virilis FBgn0201209 I 0.000
GM18380 Drosophila sechellia FBgn0173287 I 0.000
GL26299 Drosophila persimilis FBgn0163881 I 0.000
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.000
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.000
Q5U259 Xenopus laevis Q5U259 I 0.000
Q1JQ73 Xenopus laevis Q1JQ73 I 0.000
CAA59430 Xenopus laevis CAA59430 I 0.000
AAI69769 Xenopus laevis AAI69769 I 0.000
AAI16460 Xenopus laevis AAI16460 I 0.000
AAH86269 Xenopus laevis AAH86269 I 0.000
AAA96944 Xenopus laevis AAA96944 I 0.000
AAA96942 Xenopus laevis AAA96942 I 0.000
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.000
GI11879 Drosophila mojavensis FBgn0134637 I 0.000
GG24901 Drosophila erecta FBgn0117030 I 0.000
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.000
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.000
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.000
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.000
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.000
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.000
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.000
ELAVL4 Tupaia belangeri ENSTBEG00000011730 I 0.000
ELAVL3 Tupaia belangeri ENSTBEG00000006133 I 0.000
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.000
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.000
GF14992 Drosophila ananassae FBgn0092017 I 0.000
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.000
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.000
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.000
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.000
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.000
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.000
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.000
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.000
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.000
MEX3C Anolis carolinensis ENSACAG00000010265 I 0.777
Mex3b Mus musculus ENSMUSG00000057706 I 0.757
MEX3C Ornithorhynchus anatinus ENSOANG00000008116 I 0.777
MEX3B Oryctolagus cuniculus ENSOCUG00000011603 I 0.757
MEX3B Otolemur garnettii ENSOGAG00000016362 I 0.725
MEX3D Ochotona princeps ENSOPRG00000008708 I 0.745
MEX3D Procavia capensis ENSPCAG00000010972 I 0.745
MEX3B Procavia capensis ENSPCAG00000014150 I 0.765
D3ZFL6_RAT Rattus norvegicus ENSRNOG00000025142 I 0.757
MEX3B Sorex araneus ENSSARG00000006007 I 0.765
MEX3C Sorex araneus ENSSARG00000006940 I 0.784
MEX3C Tupaia belangeri ENSTBEG00000014438 I 0.784
MEX3B Takifugu rubripes ENSTRUG00000000367 I 0.748
MEX3D Takifugu rubripes ENSTRUG00000007986 I 0.765
MEX3C Vicugna pacos ENSVPAG00000003137 I 0.784
PHUM418100 Pediculus humanus PHUM418100 I 0.757
e_gw1.312.50.1 Capitella teleta e_gw1.312.50.1 I 0.755
MEX3B Monodelphis domestica ENSMODG00000019387 I 0.757
MEX3C Myotis lucifugus ENSMLUG00000012585 I 0.784
GH13638 Drosophila grimshawi FBgn0121114 I 0.000
MEX3B Anolis carolinensis ENSACAG00000011072 I 0.757
Q2YDI4_BOVIN Bos taurus ENSBTAG00000014886 I 0.777
MEX3D Bos taurus ENSBTAG00000044028 I 0.738
MEX3B Canis familiaris ENSCAFG00000013759 I 0.757
MEX3D Canis familiaris ENSCAFG00000023712 I 0.738
MEX3C Danio rerio ENSDARG00000068971 I 0.735
Mex3c Dipodomys ordii ENSDORG00000007962 I 0.784
MEX3C Erinaceus europaeus ENSEEUG00000010864 I 0.784
MEX3C Echinops telfairi ENSETEG00000003647 I 0.775
MEX3D Felis catus ENSFCAG00000002615 I 0.745
MEX3D Gallus gallus ENSGALG00000001106 I 0.767
MEX3B Loxodonta africana ENSLAFG00000006027 I 0.757
MEX3C Macropus eugenii ENSMEUG00000015929 I 0.784
MEX3D Meleagris gallopavo ENSMGAG00000002325 I 0.767
MEX3C Microcebus murinus ENSMICG00000005815 I 0.784
MEX3C Takifugu rubripes ENSTRUG00000011888 I 0.743
e_gw1.3.1475.1 Trichoplax adhaerens e_gw1.3.1475.1 I 0.755
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.000
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.000
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.000
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.000
elavl2 Danio rerio ENSDARG00000040732 I 0.000
elavl1 Danio rerio ENSDARG00000038695 I 0.000
hug Danio rerio ENSDARG00000016405 I 0.000
ELAVL2 Dasypus novemcinctus ENSDNOG00000016605 I 0.000
elavl3 Danio rerio ENSDARG00000014420 I 0.000
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.000
LOC100060819 Equus caballus ENSECAG00000019459 I 0.000
LOC100056901 Equus caballus ENSECAG00000020594 I 0.000
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.000
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.000
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.000
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.000
ELAVL3 Homo sapiens ENSG00000196361 I 0.000
ELAVL1 Felis catus ENSFCAG00000014947 I 0.000
ELAVL4 Echinops telfairi ENSETEG00000013779 I 0.000
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.000
ELAVL2 Erinaceus europaeus ENSEEUG00000008733 I 0.000
ENSCPOG00000022816 Cavia porcellus ENSCPOG00000022816 I 0.000
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.000
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.000
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.000
AGAP000965 Anopheles gambiae AGAP000965 I 0.000
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.000
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.000
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.000
Ame_R011921 Ailuropoda melanoleuca Ame_R011921 I 0.724
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.000
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.000
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.000
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.000
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.000
BGIBMGA012436 Bombyx mori BGIBMGA012436 I 0.765
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.000
mex3a Xenopus tropicalis ENSXETG00000012704 N 0.757
LOC100063974 Equus caballus ENSECAG00000007279 N 0.765
MEX3A Takifugu rubripes ENSTRUG00000007796 N 0.731
143653 Helobdella robusta 143653 N 0.755
MEX3A Tetraodon nigroviridis ENSTNIG00000004473 N 0.731
MEX3A Pan troglodytes ENSPTRG00000030373 N 0.755
MEX3A Meleagris gallopavo ENSMGAG00000015563 N 0.757
MEX3D Myotis lucifugus ENSMLUG00000017018 N 0.731
MEX3A Sorex araneus ENSSARG00000009868 N 0.755
MEX3A Loxodonta africana ENSLAFG00000009220 N 0.765
MEX3A Anolis carolinensis ENSACAG00000003739 N 0.757
MEX3A Gallus gallus ENSGALG00000014016 N 0.757
MEX3A Taeniopygia guttata ENSTGUG00000003692 N 0.750
MEX3A Gasterosteus aculeatus ENSGACG00000013282 N 0.735
MEX3A Myotis lucifugus ENSMLUG00000010185 N 0.755