gw1.2.45.1 (Selaginella moellendorfii)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 gw1.2.45.1 T24907_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.2.45.1 PUF 19 53
gw1.2.45.1 PUF 55 88
gw1.2.45.1 PUF 91 125
gw1.2.45.1 PUF 127 161
gw1.2.45.1 PUF 163 195
gw1.2.45.1 PUF 200 234
gw1.2.45.1 PUF 236 270
gw1.2.45.1 PUF 283 312

Links

Other PUF family RBPs
Other Selaginella moellendorfii RBPs

100 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000731m Prunus persica ppa000731m N 0.790
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.779
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.779
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.775
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.775
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.783
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.746
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.858
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.853
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.858
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.840
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.960
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.757
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.757
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.771
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.790
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.787
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.784
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.745
ppa000627m Prunus persica ppa000627m N 0.791
ppa000626m Prunus persica ppa000626m N 0.786
MDP0000776183 Malus x domestica MDP0000776183 N 0.772
MDP0000319167 Malus x domestica MDP0000319167 N 0.799
MDP0000314338 Malus x domestica MDP0000314338 N 0.782
MDP0000176743 Malus x domestica MDP0000176743 N 0.728
MDP0000119814 Malus x domestica MDP0000119814 N 0.714
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.775
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.784
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.744
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.742
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.759
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.755
mgf015734m Mimulus guttatus mgf015734m N 0.788
mgf015234m Mimulus guttatus mgf015234m N 0.753
mgf011401m Mimulus guttatus mgf011401m N 0.727
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.787
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.795
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.782
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.796
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.797
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.794
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.739
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.739
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.742
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.766
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.766
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.767
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.760
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.736
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.746
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.743
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.743
PK21390.1 Cannabis sativa PK21390.1 N 0.789
PK01617.1 Cannabis sativa PK01617.1 N 0.773
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.760
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.750
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.767
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.785
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.757
30143.m001164 Ricinus communis 30143.m001164 N 0.786
30143.m001162 Ricinus communis 30143.m001162 N 0.750
29595.m000292 Ricinus communis 29595.m000292 N 0.772
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.739
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.736
SB09G001090 Sorghum bicolor Sb09g001090 N 0.759
SB04G037410 Sorghum bicolor Sb04g037410 N 0.749
SB03G039600 Sorghum bicolor Sb03g039600 N 0.782
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.754
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.793
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.770
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.785
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.761
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.788
PK00601.1 Cannabis sativa PK00601.1 N 0.775