CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
SRSF5
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000009274
T39667_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SRSF5
M357_0.6
Homo sapiens
Sequence logo not available
UGGGAGCRGUYRGCUCGY
SELEX
Cook et al.(2011)
985_9037021
0.736
SRSF5
M356_0.6
Homo sapiens
Sequence logo not available
UGGGAGCRGUYRGCUCGY
SELEX
Cook et al.(2011)
984_9037021
0.736
SRSF5
M355_0.6
Homo sapiens
Sequence logo not available
UGGGAGCRGUYRGCUCGY
SELEX
Cook et al.(2011)
983_9037021
0.736
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.729
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.729
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000008006
RRM
6
68
VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVT
ENSOCUP00000008006
RRM
110
175
LIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIK
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
133 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ABT1
Danio rerio
ENSDARG00000043666
N
0.000
ABT1
Gasterosteus aculeatus
ENSGACG00000000295
N
0.000
ABT1
Oryzias latipes
ENSORLG00000019999
N
0.000
ABT1
Tetraodon nigroviridis
ENSTNIG00000014961
N
0.000
ABT1
Takifugu rubripes
ENSTRUG00000002298
N
0.000