ENSOPRG00000009667 (Ochotona princeps)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOPRG00000009667 T39997_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		1.000
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		1.000
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		1.000
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.935
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.878
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000008858 RRM 13 83
ENSOPRP00000008858 RRM 101 169
ENSOPRP00000008858 RRM 193 262
ENSOPRP00000008858 RRM 296 364

Links

Other RRM family RBPs
Other Ochotona princeps RBPs

180 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1 Homo sapiens ENSG00000070756 D 1.000
PABPC4 Homo sapiens ENSG00000090621 D 0.878
pAbp Drosophila melanogaster FBgn0261619 D 0.000
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.964
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.704
GF12652 Drosophila ananassae FBgn0089688 I 0.701
GG21846 Drosophila erecta FBgn0114024 I 0.000
GH21052 Drosophila grimshawi FBgn0128514 I 0.711
GI18654 Drosophila mojavensis FBgn0141393 I 0.718
GM21847 Drosophila sechellia FBgn0176724 I 0.000
GD11341 Drosophila simulans FBgn0183090 I 0.000
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 1.000
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.871
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.878
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.996
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 1.000
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.996
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.878
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.882
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 1.000
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.889
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.996
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.867
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 1.000
GJ21671 Drosophila virilis FBgn0208790 I 0.711
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.736
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.736
AAA60936 Xenopus laevis AAA60936 I 0.939
AAH52100 Xenopus laevis AAH52100 I 0.943
AAH72110 Xenopus laevis AAH72110 I 0.946
AAH73435 Xenopus laevis AAH73435 I 0.900
AAI08463 Xenopus laevis AAI08463 I 0.946
CAA40721 Xenopus laevis CAA40721 I 0.943
P20965 Xenopus laevis P20965 I 0.943
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.774
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.753
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.732
GK19652 Drosophila willistoni FBgn0221650 I 0.718
GE11925 Drosophila yakuba FBgn0229707 I 0.701
ISCW014211 Ixodes scapularis ISCW014211 I 0.757
PHUM617090 Pediculus humanus PHUM617090 I 0.760
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.725
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.742
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.753
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.763
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.728
Q6IP09 Xenopus laevis Q6IP09 I 0.946
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.878
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.753
CBN04295 Caenorhabditis brenneri CBN04295 I 0.000
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.753
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.996
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.882
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 1.000
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.882
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.878
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 1.000
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.885
AGAP011092 Anopheles gambiae AGAP011092 I 0.756
AAEL010318 Aedes aegypti AAEL010318 I 0.749
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.767
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.767
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.767
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.703
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.739
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.714
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.746
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.746
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.746
pabpc4 Danio rerio ENSDARG00000059259 I 0.878
LOC100054235 Equus caballus ENSECAG00000009396 I 0.882
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.875
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.996
Gm10110 Mus musculus ENSMUSG00000062093 I 0.875
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.996
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.889
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.885
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 1.000
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 1.000
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.882
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.871
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.882
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.867
PABPC4 Gallus gallus ENSGALG00000003800 I 0.892
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.878
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.882
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 1.000
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.882
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.882
PABPC1 Macaca mulatta ENSMMUG00000017786 I 1.000
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.989
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.867