APUM4 (Arabidopsis thaliana)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 AT3G10360-TAIR-G T24021_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G10360.1-P PUF 664 698
AT3G10360.1-P PUF 700 734
AT3G10360.1-P PUF 736 770
AT3G10360.1-P PUF 772 806
AT3G10360.1-P PUF 808 842
AT3G10360.1-P PUF 845 879
AT3G10360.1-P PUF 881 914
AT3G10360.1-P PUF 928 954

Links

Other PUF family RBPs
Other Arabidopsis thaliana RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.815
30143.m001162 Ricinus communis 30143.m001162 N 0.715
30143.m001164 Ricinus communis 30143.m001164 N 0.755
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.704
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.700
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.715
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.754
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.717
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.761
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.775
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.729
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.736
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.731
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.731
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.764
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.772
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.750
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.715
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.728
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.714
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.714
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.822
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.721
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.726
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.829
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.710
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.708
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.707
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.717
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.801
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.718
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.718
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.718
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.722
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.718
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.714
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.786
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.728
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.746
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.764
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.793
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.769
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.726
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.736
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.754
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.729
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.764
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.736
MDP0000119814 Malus x domestica MDP0000119814 N 0.778
MDP0000176743 Malus x domestica MDP0000176743 N 0.789
MDP0000314338 Malus x domestica MDP0000314338 N 0.746
MDP0000319167 Malus x domestica MDP0000319167 N 0.721
MDP0000776183 Malus x domestica MDP0000776183 N 0.733
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.804
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.717
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.707
mgf011401m Mimulus guttatus mgf011401m N 0.775
mgf015234m Mimulus guttatus mgf015234m N 0.728
mgf015734m Mimulus guttatus mgf015734m N 0.717
PK00601.1 Cannabis sativa PK00601.1 N 0.744
PK01617.1 Cannabis sativa PK01617.1 N 0.793
PK21390.1 Cannabis sativa PK21390.1 N 0.725
ppa000626m Prunus persica ppa000626m N 0.751
ppa000627m Prunus persica ppa000627m N 0.717
ppa000731m Prunus persica ppa000731m N 0.836
SB03G039600 Sorghum bicolor Sb03g039600 N 0.761
SB04G037410 Sorghum bicolor Sb04g037410 N 0.771
SB09G001090 Sorghum bicolor Sb09g001090 N 0.731
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.782
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.700
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.985