SRSF5 (Otolemur garnettii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOGAG00000015122 T39906_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.736
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.736
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.736
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.729
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000013544 RRM 6 68
ENSOGAP00000013544 RRM 110 175

Links

Other RRM family RBPs
Other Otolemur garnettii RBPs

133 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R005284 Ailuropoda melanoleuca Ame_R005284 N 0.000
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.729
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.729
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.729
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.736
SRSF4 Echinops telfairi ENSETEG00000009774 N 0.000
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.713
Srsf6 Mus musculus ENSMUSG00000016921 I 0.729
SRSF6 Otolemur garnettii ENSOGAG00000014468 N 0.000
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.705
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.721
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.729
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.721
SRSF6 Sus scrofa ENSSSCG00000007362 N 0.000
SRSF6 Vicugna pacos ENSVPAG00000003016 N 0.000
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.721
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.721
SRSF6 Macaca mulatta ENSMMUG00000006742 N 0.000
SRSF6 Choloepus hoffmanni ENSCHOG00000000561 N 0.000
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.729
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.000
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.729
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.729
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.713
SRSF6 Felis catus ENSFCAG00000013915 N 0.000
SRSF6 Homo sapiens ENSG00000124193 I 0.729
SRSF6 Gallus gallus ENSGALG00000000990 N 0.000
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.729
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.721
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.721
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.721
srsf6a Danio rerio ENSDARG00000013729 I 0.721