Sfrs5 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000005513 T41041_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.736
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.736
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.736
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.729
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000007583 RRM 6 68
ENSRNOP00000007583 RRM 109 174
ENSRNOP00000055092 RRM 6 68
ENSRNOP00000055092 RRM 110 175

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

134 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
13113.t00051 Oryza sativa 13113.t00051 N 0.000
bhlh128 Oryza sativa LOC_Os07g13000 N 0.000
CRE28229 Caenorhabditis remanei CRE28229 N 0.000
LOC_Os01g23230 Oryza sativa LOC_Os01g23230 N 0.000
LOC_Os01g38049 Oryza sativa LOC_Os01g38049 N 0.000
LOC_Os01g38058 Oryza sativa LOC_Os01g38058 N 0.000
LOC_Os02g27930 Oryza sativa LOC_Os02g27930 N 0.000
LOC_Os02g29690 Oryza sativa LOC_Os02g29690 N 0.000
LOC_Os02g30000 Oryza sativa LOC_Os02g30000 N 0.000
LOC_Os03g23770 Oryza sativa LOC_Os03g23770 N 0.000
LOC_Os03g32370 Oryza sativa LOC_Os03g32370 N 0.000
LOC_Os03g33140 Oryza sativa LOC_Os03g33140 N 0.000
LOC_Os03g61370 Oryza sativa LOC_Os03g61370 N 0.000
LOC_Os04g03110 Oryza sativa LOC_Os04g03110 N 0.000
LOC_Os04g04820 Oryza sativa LOC_Os04g04820 N 0.000
LOC_Os04g05340 Oryza sativa LOC_Os04g05340 N 0.000
LOC_Os04g07730 Oryza sativa LOC_Os04g07730 N 0.000
LOC_Os04g13950 Oryza sativa LOC_Os04g13950 N 0.000
LOC_Os04g15999 Oryza sativa LOC_Os04g15999 N 0.000
LOC_Os04g16649 Oryza sativa LOC_Os04g16649 N 0.000
LOC_Os04g22680 Oryza sativa LOC_Os04g22680 N 0.000
LOC_Os04g44490 Oryza sativa LOC_Os04g44490 N 0.000
LOC_Os05g17150 Oryza sativa LOC_Os05g17150 N 0.000
LOC_Os05g17340 Oryza sativa LOC_Os05g17340 N 0.000
LOC_Os05g17900 Oryza sativa LOC_Os05g17900 N 0.000
LOC_Os05g20490 Oryza sativa LOC_Os05g20490 N 0.000
LOC_Os05g24370 Oryza sativa LOC_Os05g24370 N 0.000
LOC_Os05g24380 Oryza sativa LOC_Os05g24380 N 0.000
LOC_Os05g25740 Oryza sativa LOC_Os05g25740 N 0.000
LOC_Os05g29840 Oryza sativa LOC_Os05g29840 N 0.000
LOC_Os05g44500 Oryza sativa LOC_Os05g44500 N 0.000
LOC_Os06g14990 Oryza sativa LOC_Os06g14990 N 0.000
LOC_Os06g27390 Oryza sativa LOC_Os06g27390 N 0.000
LOC_Os06g36900 Oryza sativa LOC_Os06g36900 N 0.000
LOC_Os06g38603 Oryza sativa LOC_Os06g38603 N 0.000
LOC_Os07g16360 Oryza sativa LOC_Os07g16360 N 0.000
LOC_Os07g19240 Oryza sativa LOC_Os07g19240 N 0.000
LOC_Os07g33170 Oryza sativa LOC_Os07g33170 N 0.000
LOC_Os07g45850 Oryza sativa LOC_Os07g45850 N 0.000
LOC_Os08g10370 Oryza sativa LOC_Os08g10370 N 0.000
LOC_Os08g11740 Oryza sativa LOC_Os08g11740 N 0.000
LOC_Os08g11860 Oryza sativa LOC_Os08g11860 N 0.000
LOC_Os08g16510 Oryza sativa LOC_Os08g16510 N 0.000
LOC_Os08g19510 Oryza sativa LOC_Os08g19510 N 0.000
LOC_Os08g20700 Oryza sativa LOC_Os08g20700 N 0.000
LOC_Os08g21860 Oryza sativa LOC_Os08g21860 N 0.000
LOC_Os09g01010 Oryza sativa LOC_Os09g01010 N 0.000
LOC_Os09g03060 Oryza sativa LOC_Os09g03060 N 0.000
LOC_Os09g13640 Oryza sativa LOC_Os09g13640 N 0.000
LOC_Os10g03020 Oryza sativa LOC_Os10g03020 N 0.000
LOC_Os10g06260 Oryza sativa LOC_Os10g06260 N 0.000
LOC_Os10g06330 Oryza sativa LOC_Os10g06330 N 0.000
LOC_Os10g09960 Oryza sativa LOC_Os10g09960 N 0.000
LOC_Os10g18970 Oryza sativa LOC_Os10g18970 N 0.000
LOC_Os10g22620 Oryza sativa LOC_Os10g22620 N 0.000
LOC_Os10g24290 Oryza sativa LOC_Os10g24290 N 0.000
LOC_Os10g24420 Oryza sativa LOC_Os10g24420 N 0.000
LOC_Os11g17180 Oryza sativa LOC_Os11g17180 N 0.000
LOC_Os11g26270 Oryza sativa LOC_Os11g26270 N 0.000
LOC_Os11g26370 Oryza sativa LOC_Os11g26370 N 0.000
LOC_Os11g27950 Oryza sativa LOC_Os11g27950 N 0.000
LOC_Os12g14430 Oryza sativa LOC_Os12g14430 N 0.000
LOC_Os12g18310 Oryza sativa LOC_Os12g18310 N 0.000
LOC_Os12g23420 Oryza sativa LOC_Os12g23420 N 0.000
LOC_Os12g24940 Oryza sativa LOC_Os12g24940 N 0.000
XP_001178848.1 Strongylocentrotus purpuratus XP_001178848.1 N 0.000
XP_001190095.1 Strongylocentrotus purpuratus XP_001190095.1 N 0.000