CELF6 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000001928 T41395_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.990
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.838
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.744
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.720
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000002106 RRM 9 78
ENSSSCP00000002106 RRM 97 164
ENSSSCP00000002106 RRM 358 428

Links

Other RRM family RBPs
Other Sus scrofa RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29889.m003364 Ricinus communis 29889.m003364 N 0.000
29955.m001158 Ricinus communis 29955.m001158 N 0.000
30169.m006347 Ricinus communis 30169.m006347 N 0.000
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.000
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.000
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.000
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.000
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.000
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.000
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.000
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.000
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.000
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.000
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.000
cassava16277.m1 Manihot esculenta cassava16277.m1 N 0.000
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.000
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.000
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.000
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.000
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.000
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.000
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.000
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.000
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.000
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.000
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.000
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.000
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.000
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.000
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.000
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.000
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.000
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.000
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.000
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.000
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.000
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.000
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.000
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.000
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.000
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.000
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.000
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.000
MDP0000132385 Malus x domestica MDP0000132385 N 0.000
MDP0000171737 Malus x domestica MDP0000171737 N 0.000
MDP0000231231 Malus x domestica MDP0000231231 N 0.000
MDP0000286471 Malus x domestica MDP0000286471 N 0.000
MDP0000299155 Malus x domestica MDP0000299155 N 0.000
MDP0000306387 Malus x domestica MDP0000306387 N 0.000
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.000
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.000
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.000
mgf014143m Mimulus guttatus mgf014143m N 0.000
mgf015583m Mimulus guttatus mgf015583m N 0.000
mgf017987m Mimulus guttatus mgf017987m N 0.000
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.000
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.000
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.000
PK02315.1 Cannabis sativa PK02315.1 N 0.000
PK17832.1 Cannabis sativa PK17832.1 N 0.000
PK23104.1 Cannabis sativa PK23104.1 N 0.000
ppa003664m Prunus persica ppa003664m N 0.000
ppa018635m Prunus persica ppa018635m N 0.000
SB03G031190 Sorghum bicolor Sb03g031190 N 0.000
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.000
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.000