HNRNPA3 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000016958 T42159_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.793
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.793
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.793
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.771
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.757
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000003312 RRM 20 89
ENSTNIP00000003312 RRM 111 180
ENSTNIP00000020080 RRM 9 78
ENSTNIP00000020080 RRM 100 169

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

185 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.779
AAA49742 Xenopus laevis AAA49742 I 0.779
AAA49949 Xenopus laevis AAA49949 I 0.793
AAA49950 Xenopus laevis AAA49950 I 0.789
AAH45260 Xenopus laevis AAH45260 I 0.793
AAH72090 Xenopus laevis AAH72090 I 0.793
AAI69881 Xenopus laevis AAI69881 I 0.789
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.793
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.745
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.702
CBF67555 Xenopus laevis CBF67555 I 0.779
CBF67578 Xenopus laevis CBF67578 I 0.789
CBF67672 Xenopus laevis CBF67672 I 0.793
CBU92428 Xenopus laevis CBU92428 I 0.779
CBU92451 Xenopus laevis CBU92451 I 0.789
CBU92546 Xenopus laevis CBU92546 I 0.793
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.761
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.793
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.738
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.807
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.750
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.757
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.723
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.800
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.723
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.704
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.709
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.750
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.786
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.725
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.816
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.709
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.718
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.711
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.706
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.723
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.723
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.718
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.759
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.736
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.709
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.766
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.743
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.730
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.723
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.793
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.716
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.764
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.771
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.700
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.793
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.716
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.816
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.771
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.793
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.738
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.764
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.779
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.716
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.793
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.793
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.814
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.743
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.786
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.750
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.702
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.702
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.786
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.800
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.771
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.787
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.793
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.711
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.779
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.816
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.738
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.716
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.764
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.786
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.793
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.786
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.786
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.786
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.745
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.764
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.779
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.786
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.793
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.779
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.771
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.786
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.821
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.700
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.780
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.766
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.729
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.757
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.743
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.793
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.757
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.723
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.752
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.702
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.743
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.739
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.757
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.721
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.793
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.745
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.716
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.793
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.730
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.745
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.829
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.793
Gm8991 Mus musculus ENSMUSG00000059179 I 0.821
HNRNPA1 Homo sapiens ENSG00000135486 D 0.793
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.793
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.750
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.721
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.793
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.793
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.793
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.771
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.793
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.814
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.800
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.814
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.816
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.816
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.886
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.816
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.816
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.821
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.757
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.738
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.816
HNRNPA3 Homo sapiens ENSG00000170144 I 0.816
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.816
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.816
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.814
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.725
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.816
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.887
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.816
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.816
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.809
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.859
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.816
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.814
LOC100054206 Equus caballus ENSECAG00000006699 I 0.704
LOC100066794 Equus caballus ENSECAG00000023237 I 0.814
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.816
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.793
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.738
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.786
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.771
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.771
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.816
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.771
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.771
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.786
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.793
LOC781499 Bos taurus ENSBTAG00000021580 I 0.816
LOC785445 Bos taurus ENSBTAG00000025621 I 0.759
P17130 Xenopus laevis P17130 I 0.779
P51968 Xenopus laevis P51968 I 0.793
P51992 Xenopus laevis P51992 I 0.789
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.958
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.821
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.793
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.793
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.771
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.793
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.816
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.793
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.771
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.757
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.757
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.730
zgc:66127 Danio rerio ENSDARG00000011020 I 0.743