ppa006963m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa006963m T58381_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa006963m RRM 59 127
ppa006963m RRM 147 217

Links

Other RRM family RBPs
Other Prunus persica RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29629.m001425 Ricinus communis 29629.m001425 N 0.879
29917.m002004 Ricinus communis 29917.m002004 N 0.736
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.850
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.700
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.879
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.721
BGIOSIBCE027406 Oryza indica BGIOSIBCE027406 N 0.759
BRADI3G39090 Brachypodium distachyon BRADI3G39090 N 0.707
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.871
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.886
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.757
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.757
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.850
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.707
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.764
Glyma13g11650.1 Glycine max Glyma13g11650.1 N 0.800
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.764
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.771
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.764
GRMZM2G050218 Zea mays GRMZM2G050218 N 0.721
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.857
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.886
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.764
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.736
LjSGA_018192.1 Lotus japonicus LjSGA_018192.1 N 0.793
LOC_Os08g23120 Oryza sativa LOC_Os08g23120 N 0.759
MDP0000191633 Malus x domestica MDP0000191633 N 0.943
MDP0000202850 Malus x domestica MDP0000202850 N 0.950
MDP0000220851 Malus x domestica MDP0000220851 N 0.943
MDP0000270712 Malus x domestica MDP0000270712 N 0.729
MDP0000288646 Malus x domestica MDP0000288646 N 0.757
MDP0000303054 Malus x domestica MDP0000303054 N 0.729
MDP0000908645 Malus x domestica MDP0000908645 N 0.757
Medtr3g106660 Medicago truncatula Medtr3g106660 N 0.743
mgf016066m Mimulus guttatus mgf016066m N 0.700
mgf019396m Mimulus guttatus mgf019396m N 0.807
PDK_20s1363571g001 Phoenix dactylifera PDK_20s1363571g001 N 0.743
PK13311.1 Cannabis sativa PK13311.1 N 0.721
PK22392.1 Cannabis sativa PK22392.1 N 0.879
ppa007179m Prunus persica ppa007179m N 0.743
ppa007812m Prunus persica ppa007812m N 0.793
SB03G027920 Sorghum bicolor Sb03g027920 N 0.723
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.836