mgf000973m (Mimulus guttatus)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		mgf000973m T00985_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf000973m CCCH ZF 212 234
mgf000973m RRM 324 384

Links

Other CCCH ZF,RRM family RBPs
Other Mimulus guttatus RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.793
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.714
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.793
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.714
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.798
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.718
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.750
PK18074.1 Cannabis sativa PK18074.1 N 0.776
PK20504.1 Cannabis sativa PK20504.1 N 0.729
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.833
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.814
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.786
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.782
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.786
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.782
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.786
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.786
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.765
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.779
MDP0000214614 Malus x domestica MDP0000214614 N 0.706
MDP0000259773 Malus x domestica MDP0000259773 N 0.765
MDP0000256775 Malus x domestica MDP0000256775 N 0.765
MDP0000243086 Malus x domestica MDP0000243086 N 0.786
MDP0000220601 Malus x domestica MDP0000220601 N 0.776
MDP0000120462 Malus x domestica MDP0000120462 N 0.798
MDP0000120231 Malus x domestica MDP0000120231 N 0.810
MDP0000164538 Malus x domestica MDP0000164538 N 0.765
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.821
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.821
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.821
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.821
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.706
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.786
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.812
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.812
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.800
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.805
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.753
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.770
mgf014647m Mimulus guttatus mgf014647m N 0.741
mgf002273m Mimulus guttatus mgf002273m N 0.859
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.750
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.762
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.753
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.750
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.753
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.762
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.779
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.767
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.701
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.776
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.798
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.788
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.821
ppa002383m Prunus persica ppa002383m N 0.776
ppa002413m Prunus persica ppa002413m N 0.810
ppa003564m Prunus persica ppa003564m N 0.706
ppa023263m Prunus persica ppa023263m N 0.798
30169.m006471 Ricinus communis 30169.m006471 N 0.833
30169.m006472 Ricinus communis 30169.m006472 N 0.800
SB02G043180 Sorghum bicolor Sb02g043180 N 0.750
SB05G001540 Sorghum bicolor Sb05g001540 N 0.800
SB01G036490 Sorghum bicolor Sb01g036490 N 0.774
SB08G001980 Sorghum bicolor Sb08g001980 N 0.824
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.810
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.857
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.786
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.750
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.824
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.753
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.774
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.774
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.824