XR_022686.1 (Pan troglodytes)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSPTRG00000008673 T16983_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		1.000
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.958
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.958
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.958
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.917
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.917
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000014791 CSD 94 164

Links

Other CSD family RBPs
Other Pan troglodytes RBPs

198 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.778
AAEL001375 Aedes aegypti AAEL001375 I 0.750
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.764
AGAP006108 Anopheles gambiae AGAP006108 I 0.750
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.792
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.792
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.792
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.944
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.944
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.915
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.986
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.887
Bm1_57515 Brugia malayi Bm1_57515 I 0.722
CBN16711 Caenorhabditis brenneri CBN16711 I 0.722
CBG02981 Caenorhabditis briggsae CBG02981 I 0.708
cey-1 Caenorhabditis elegans F33A8.3 I 0.708
CRE01789 Caenorhabditis remanei CRE01789 I 0.722
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.915
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.972
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.750
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.847
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.944
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.806
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.789
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.887
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.833
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.750
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.819
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.944
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.750
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.873
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.944
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.887
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.797
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.792
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.930
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.944
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.778
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.778
YBX2 Canis familiaris ENSCAFG00000016128 I 0.986
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.736
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.722
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.819
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.750
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.722
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.722
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.722
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.944
CSDA Cavia porcellus ENSCPOG00000011329 I 0.944
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.986
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.944
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.753
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.781
ybx1 Danio rerio ENSDARG00000004757 I 0.944
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.792
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.726
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.781
Csda Dipodomys ordii ENSDORG00000009103 I 0.944
GF10852 Drosophila ananassae FBgn0087892 I 0.792
GH16919 Drosophila grimshawi FBgn0124390 I 0.792
yps Drosophila melanogaster FBgn0022959 I 0.778
GI13673 Drosophila mojavensis FBgn0136428 I 0.792
GL15684 Drosophila persimilis FBgn0153288 I 0.792
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.792
GM24682 Drosophila sechellia FBgn0179545 I 0.778
GD12750 Drosophila simulans FBgn0184477 I 0.778
GJ14010 Drosophila virilis FBgn0201228 I 0.792
GK16710 Drosophila willistoni FBgn0218712 I 0.792
GE20150 Drosophila yakuba FBgn0237472 I 0.778
CSDA Echinops telfairi ENSETEG00000002557 I 0.944
YBX2 Echinops telfairi ENSETEG00000014271 I 0.781
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.944
LOC100067336 Equus caballus ENSECAG00000023592 I 0.944
LOC100065107 Equus caballus ENSECAG00000013777 I 0.944
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.930
LOC100072964 Equus caballus ENSECAG00000009996 I 0.986
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.944
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.901
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.944
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.944
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.944
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.944
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.836
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.930
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.944
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.736
YBX2 Gorilla gorilla ENSGGOG00000007399 I 1.000
146547 Helobdella robusta 146547 I 0.722
133388 Helobdella robusta 133388 I 0.736
YB-1 Homo sapiens ENSG00000065978 D 0.944
CSDA Homo sapiens ENSG00000060138 I 0.944
YBX2 Homo sapiens ENSG00000006047 D 1.000
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.819
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.819
ISCW005281 Ixodes scapularis ISCW005281 I 0.806
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.819
CSDA Loxodonta africana ENSLAFG00000017247 I 0.944
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.944
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.986
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.972
CSDA Macaca mulatta ENSMMUG00000022469 I 0.944
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.930
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.944
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.792
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.944
CSDA Microcebus murinus ENSMICG00000004602 I 0.817
YBX1 Microcebus murinus ENSMICG00000014984 I 0.944
YBX2 Microcebus murinus ENSMICG00000012453 I 0.704
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.887
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.972
CSDA Monodelphis domestica ENSMODG00000018248 I 0.930
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.944
Csda Mus musculus ENSMUSG00000030189 I 0.944
Ybx1 Mus musculus ENSMUSG00000028639 I 0.944
Ybx2 Mus musculus ENSMUSG00000018554 I 0.986
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.944
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.915
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.806
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.917
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.750
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.986
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.764
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.792
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.944
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.944
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.708
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.730
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.944
YBX2 Oryzias latipes ENSORLG00000018683 I 0.722
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.836
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.764
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.704
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.944
CSDA Pan troglodytes ENSPTRG00000004681 I 0.944
PHUM156720 Pediculus humanus PHUM156720 I 0.764
PHUM156710 Pediculus humanus PHUM156710 I 0.792
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.944
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.775
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.764
YBX2 Procavia capensis ENSPCAG00000008019 I 0.986
CSDA Procavia capensis ENSPCAG00000001397 I 0.887
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.944
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.944
Csda Rattus norvegicus ENSRNOG00000005480 I 0.944
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.887
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.708
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.833
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.986
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.944
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.930
ENSRNOG00000023294 Rattus norvegicus ENSRNOG00000023294 N 0.708
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.750
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.915
YBX2 Sorex araneus ENSSARG00000000488 I 0.972
YBX1 Sorex araneus ENSSARG00000012628 I 0.736
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.944
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.792
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.792
CSDA Sus scrofa ENSSSCG00000000633 I 0.944
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.887
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.750
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.819
YBX2 Sus scrofa ENSSSCG00000017938 I 0.986
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.944
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.944
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.849
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.944
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.750
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.849
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.944
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.792
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.722
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.986
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.944
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.831
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.781
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.704
CSDA Vicugna pacos ENSVPAG00000000876 I 0.817
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.944
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.722
P21574 Xenopus laevis P21574 I 0.958
P45441 Xenopus laevis P45441 I 0.944
P21573 Xenopus laevis P21573 I 0.944
CAA42778 Xenopus laevis CAA42778 I 0.944
ybx2-a Xenopus laevis AAI69706 D 0.958
AAI69704 Xenopus laevis AAI69704 I 0.958
AAI55915 Xenopus laevis AAI55915 I 0.958
AAI55914 Xenopus laevis AAI55914 I 0.944
AAI30161 Xenopus laevis AAI30161 I 0.944
AAI06324 Xenopus laevis AAI06324 I 0.944
AAH42217 Xenopus laevis AAH42217 I 0.944
AAH41191 Xenopus laevis AAH41191 I 0.944
AAA49924 Xenopus laevis AAA49924 I 0.944
AAA49716 Xenopus laevis AAA49716 I 0.958
AAA49715 Xenopus laevis AAA49715 I 0.944
Q00436 Xenopus laevis Q00436 I 0.944
csda Xenopus tropicalis ENSXETG00000016239 I 0.901
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.944