pabpc4 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000010946 T42870_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.857
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.835
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.835
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.835
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.774
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000023927 RRM 13 66
ENSXETP00000023927 RRM 101 169
ENSXETP00000023927 RRM 193 261
ENSXETP00000023927 RRM 306 374
ENSXETP00000023929 RRM 1 40
ENSXETP00000023929 RRM 75 143

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.000
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.000
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.000
AAEL010318 Aedes aegypti AAEL010318 I 0.000
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.839
AGAP011092 Anopheles gambiae AGAP011092 I 0.000
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.000
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.000
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.000
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.707
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.857
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.000
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.000
CBN04295 Caenorhabditis brenneri CBN04295 I 0.000
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.835
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.853
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.857
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.835
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.000
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.864
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.000
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.000
pabpc4 Danio rerio ENSDARG00000059259 I 0.871
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.000
GF12652 Drosophila ananassae FBgn0089688 I 0.000
GG21846 Drosophila erecta FBgn0114024 I 0.000
GH21052 Drosophila grimshawi FBgn0128514 I 0.000
pAbp Drosophila melanogaster FBgn0261619 D 0.000
GI18654 Drosophila mojavensis FBgn0141393 I 0.000
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.000
GM21847 Drosophila sechellia FBgn0176724 I 0.000
GD11341 Drosophila simulans FBgn0183090 I 0.000
GJ21671 Drosophila virilis FBgn0208790 I 0.000
GK19652 Drosophila willistoni FBgn0221650 I 0.000
GE11925 Drosophila yakuba FBgn0229707 I 0.000
LOC100054235 Equus caballus ENSECAG00000009396 I 0.857
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.853
PABPC4 Gallus gallus ENSGALG00000003800 I 0.896
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.864
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.857
PABPC1 Homo sapiens ENSG00000070756 D 0.835
PABPC4 Homo sapiens ENSG00000090621 D 0.857
ISCW014211 Ixodes scapularis ISCW014211 I 0.701
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.000
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.000
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.857
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.835
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.835
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.860
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.857
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.832
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.885
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.846
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.839
Gm10110 Mus musculus ENSMUSG00000062093 I 0.849
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.000
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.000
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.000
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.000
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.835
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.849
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.839
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.903
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.853
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.835
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.835
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.857
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.838
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.857
PHUM617090 Pediculus humanus PHUM617090 I 0.714
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.857
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.835
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.835
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.846
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.839
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.000
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.000
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.835
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.857
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.882
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.839
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.871
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.867
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.835
P20965 Xenopus laevis P20965 I 0.828
CAA40721 Xenopus laevis CAA40721 I 0.828
AAI08463 Xenopus laevis AAI08463 I 0.835
AAH73435 Xenopus laevis AAH73435 I 0.932
AAH72110 Xenopus laevis AAH72110 I 0.835
AAH52100 Xenopus laevis AAH52100 I 0.828
AAA60936 Xenopus laevis AAA60936 I 0.824
Q6IP09 Xenopus laevis Q6IP09 I 0.835
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.842