CELF3 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000010447 T40182_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.807
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.789
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000013089 RRM 7 84
ENSORLP00000013089 RRM 118 186
ENSORLP00000013089 RRM 413 483

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.940
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.931
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.913
Q91579 Xenopus laevis Q91579 I 0.894
AAH72134 Xenopus laevis AAH72134 I 0.894
AAA81375 Xenopus laevis AAA81375 I 0.894
AAH57704 Xenopus laevis AAH57704 I 0.894
AAH46942 Xenopus laevis AAH46942 I 0.885
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.885
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.881
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.881
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.881
Celf3 Mus musculus ENSMUSG00000028137 I 0.881
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.881
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.881
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.881
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.881
CELF3 Equus caballus ENSECAG00000020365 I 0.881
CELF3 Homo sapiens ENSG00000159409 I 0.881
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.881
CELF3 Canis familiaris ENSCAFG00000012794 I 0.881
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.881
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.881
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.876
celf3 Danio rerio ENSDARG00000034668 I 0.872
CELF3 Sus scrofa ENSSSCG00000006618 I 0.862
CELF3 Danio rerio ENSDARG00000006983 I 0.858
CELF3 Procavia capensis ENSPCAG00000001623 I 0.853
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.849
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.830
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.821
celf5 Danio rerio ENSDARG00000071375 I 0.817
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.817
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.817
CELF5 Oryzias latipes ENSORLG00000004600 I 0.812
Celf4 Mus musculus ENSMUSG00000024268 I 0.812
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.807
BRUNOL5 Homo sapiens ENSG00000161082 D 0.807
CELF4 Oryzias latipes ENSORLG00000008913 I 0.803
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.794
Celf6 Mus musculus ENSMUSG00000032297 I 0.794
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.794
CELF6 Felis catus ENSFCAG00000016249 I 0.794
CELF6 Bos taurus ENSBTAG00000014092 I 0.794
CELF6 Sus scrofa ENSSSCG00000001928 I 0.794
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.794
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.789
ACH69785 Xenopus laevis ACH69785 I 0.789
HEXA Macaca mulatta ENSMMUG00000010687 I 0.789
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.789
BRUNOL6 Homo sapiens ENSG00000140488 D 0.789
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.789
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.784
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.784
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.780
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.780
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.780
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.775
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.775
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.773
CELF3 Oryzias latipes ENSORLG00000002630 I 0.753
Bm1_27610 Brugia malayi Bm1_27610 I 0.743
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.740
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.729
ACH69784 Xenopus laevis ACH69784 I 0.726
CELF3 Pteropus vampyrus ENSPVAG00000015012 N 0.726
CELF3 Microcebus murinus ENSMICG00000010644 N 0.725
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.721
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.717
CELF3 Tursiops truncatus ENSTTRG00000009835 N 0.717
BRUNOL4 Homo sapiens ENSG00000101489 D 0.717
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.717
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.717
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.712
CELF3 Dasypus novemcinctus ENSDNOG00000011384 N 0.708
CRE09771 Caenorhabditis remanei CRE09771 I 0.703
CBG15358 Caenorhabditis briggsae CBG15358 I 0.703
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.702