XM_002890463.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.C_scaffold_1001899 T44459_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_1001899 RRM 19 87

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.971
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.971
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.971
ppa018926m Prunus persica ppa018926m I 0.870
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.870
ppa019392m Prunus persica ppa019392m I 0.870
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.841
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.841
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.841
PK15672.1 Cannabis sativa PK15672.1 I 0.841
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.826
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.826
MDP0000134468 Malus x domestica MDP0000134468 I 0.812
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.812
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.797
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.797
MDP0000233609 Malus x domestica MDP0000233609 I 0.783
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.783
29908.m006046 Ricinus communis 29908.m006046 I 0.783
MDP0000284454 Malus x domestica MDP0000284454 I 0.768
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.768
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.768
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.754
ppa009716m Prunus persica ppa009716m I 0.754
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.754
ppa009964m Prunus persica ppa009964m I 0.754
mgf017214m Mimulus guttatus mgf017214m I 0.739
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.739
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.739
PK21213.1 Cannabis sativa PK21213.1 I 0.739
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.739
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.739
MDP0000138486 Malus x domestica MDP0000138486 I 0.725
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.725
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.725
MDP0000184420 Malus x domestica MDP0000184420 I 0.725
CU179634_3 Medicago truncatula CU179634_3 I 0.725
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.725
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.725
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.710
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.710
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.710
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.710
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.710
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.710
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.710
ppa016222m Prunus persica ppa016222m I 0.710
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.710
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.710
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.710
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.710
30076.m004440 Ricinus communis 30076.m004440 I 0.710
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.710
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.710