ENSSHAG00000016107 (Sarcophilus harrisii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSSHAG00000016107 T087381_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSSHAG00000016107
M24337_2.00		 Sarcophilus harrisii NGURGKKU JPLE
Sasse et al.(2025)
RM_Sar.har_ENSSHAG00000016107 		0.009

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.980
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.980
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.980
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.980
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.723
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.009
(88.14%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSHAP00000018976 RRM 34 111
ENSSHAP00000018976 RRM 108 176

RNA contacting residues

Links

Other RRM family RBPs
Other Sarcophilus harrisii RBPs

186 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Aan_R001274 Calypte anna Aan_R001274 I 0.782
Aan_R015520 Calypte anna Aan_R015520 I 0.986
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.782
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.986
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.758
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.980
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.782
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.986
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.973
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.980
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.755
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.728
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.816
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.735
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.986
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.748
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.980
ENSCAFG00000007359 Canis familiaris ENSCAFG00000007359 I 0.000
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.932
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.980
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.980
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.980
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.980
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.782
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.980
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.833
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.762
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.872
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.878
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.741
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.741
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.755
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 1.000
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.980
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.980
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.755
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.755
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.980
ENSOANG00000011381 Ornithorhynchus anatinus ENSOANG00000011381 N 0.000
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.748
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.980
ENSONIG00000012010 Oreochromis niloticus ENSONIG00000012010 I 0.000
ENSORLG00000004232 Oryzias latipes ENSORLG00000004232 I 0.714
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.980
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.755
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.980
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.797
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.723
ENSPFOG00000016436 Poecilia formosa ENSPFOG00000016436 I 0.000
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.728
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.980
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.755
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.755
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.986
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.755
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.980
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.755
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.986
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.709
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.804
ENSXMAG00000019883 Xiphophorus maculatus ENSXMAG00000019883 I 0.000
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.986
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.986
nono Takifugu rubripes ENSTRUG00000005554 I 0.703
nono Gasterosteus aculeatus ENSGACG00000011824 I 0.000
nono Danio rerio ENSDARG00000020482 I 0.721
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.782
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.755
pspc1 Takifugu rubripes ENSTRUG00000011335 I 0.000
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.748
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.748
pspc1 Tetraodon nigroviridis ENSTNIG00000010358 I 0.000
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.782
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.748
PSPC1 Sorex araneus ENSSARG00000000888 I 0.755
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.755
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.755
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.755
PSPC1 Bos taurus ENSBTAG00000003934 I 0.748
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.769
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.755
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.755
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.755
pspc1 Danio rerio ENSDARG00000006621 I 0.735
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.755
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.748
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.748
PSPC1 Felis catus ENSFCAG00000027841 I 0.755
PSPC1 Homo sapiens ENSG00000121390 I 0.755
pspc1 Gasterosteus aculeatus ENSGACG00000014901 I 0.000
PSPC1 Gallus gallus ENSGALG00000017142 I 0.782
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.755
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.755
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.755
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.755
Pspc1 Mus musculus ENSMUSG00000021938 I 0.755
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.782
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.755
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.782
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.973
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.980
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.980
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.884
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.980
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.939
SFPQ Bos taurus ENSBTAG00000016328 I 0.980
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.980
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.952
SFPQ Echinops telfairi ENSETEG00000001095 I 0.980
SFPQ Homo sapiens ENSG00000116560 D 0.980
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.832
SFPQ Gallus gallus ENSGALG00000002514 I 0.973
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.980
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.980
SFPQ Monodelphis domestica ENSMODG00000017937 I 1.000
Sfpq Mus musculus ENSMUSG00000028820 I 0.980
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.980
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.980
sfpq Oryzias latipes ENSORLG00000007459 I 0.801
SFPQ Procavia capensis ENSPCAG00000006164 I 0.980
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.980
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.980
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.932
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.842
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.884
Tal_R009732 Tyto alba Tal_R009732 I 0.782
Tal_R009770 Tyto alba Tal_R009770 I 0.986