CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PCBP3
(
Macaca mulatta
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSMMUG00000003825
T19056_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
1.000
pcbp2
M211_0.6
Danio rerio
WWUCCC
RNAcompete
Ray et al.(2013)
RNCMPT00246
0.883
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
0.883
Pcbp1
M207_0.6
Mus musculus
CYUUCC
RNAcompete
Ray et al.(2013)
RNCMPT00239
0.862
PCBP1
M177_0.6
Homo sapiens
CCWWHCC
RNAcompete
Ray et al.(2013)
RNCMPT00186
0.862
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000005096
KH
15
75
TIRLLMHGKVRGATIGTKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI
ENSMMUP00000005096
KH
99
162
TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI
ENSMMUP00000005096
KH
238
300
THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI
ENSMMUP00000005097
KH
15
75
TIRLLMHGKVRGATIGTKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI
ENSMMUP00000005097
KH
99
162
TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI
ENSMMUP00000005097
KH
243
305
THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI
ENSMMUP00000035727
KH
15
75
TIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI
ENSMMUP00000035727
KH
99
162
TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI
ENSMMUP00000035727
KH
285
347
THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI
ENSMMUP00000035728
KH
15
75
TIRLLMHGKVRGATIGTKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI
ENSMMUP00000035728
KH
99
162
TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI
ENSMMUP00000035728
KH
263
325
THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI
Links
Other
KH
family RBPs
Other
Macaca mulatta
RBPs
135 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ARB_03865
Arthroderma benhamiae
ARB_03865
N
0.000
BC1G_14118
Botrytis cinerea
BC1G_14118
N
0.000
BDBG_09466
Blastomyces dermatitidis
BDBG_09466
N
0.000
ACLA_068670
Aspergillus clavatus
CADACLAG00006690
N
0.000
AFLA_129820
Aspergillus flavus
CADAFLAG00010040
N
0.000
AFUA_2G05670
Aspergillus fumigatus
CADAFUAG00003365
N
0.000
An02g14100
Aspergillus niger
CADANGAG00002937
N
0.000
ANIA_07480
Aspergillus nidulans
CADANIAG00000573
N
0.000
AO090001000681
Aspergillus oryzae
CADAORAG00000620
N
0.000
ATEG_06757
Aspergillus terreus
CADATEAG00009116
N
0.000
NFIA_082390
Neosartorya fischeri
CADNFIAG00007689
N
0.000
CHGG_05709
Chaetomium globosum
CHGG_05709
N
0.000
CIMG_00769
Coccidioides immitis
CIMG_00769
N
0.000
CPSG_07981
Coccidioides posadasii
CPSG_07981
N
0.000
EAT78895.1
Phaeosphaeria nodorum
EAT78895.1
N
0.000
estExt_fgenesh1_pg.C_260060
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_260060
N
0.000
estExt_fgenesh1_pg.C_sca_10_chr8_2_00298
Nectria haematococca
estExt_fgenesh1_pg.C_sca_10_chr8_2_00298
N
0.000
estExt_fgenesh1_pm.C_10719
Cryphonectria parasitica
estExt_fgenesh1_pm.C_10719
N
0.000
estExt_fgenesh1_pm.C_60118
Neurospora tetrasperma
estExt_fgenesh1_pm.C_60118
N
0.000
estExt_fgenesh3_kg.C_190032
Neurospora discreta
estExt_fgenesh3_kg.C_190032
N
0.000
estExt_Genewise1.C_240173
Cochliobolus heterostrophus C5
estExt_Genewise1.C_240173
N
0.000
estExt_Genewise1.C_32212
Thielavia terrestris
estExt_Genewise1.C_32212
N
0.000
estExt_Genewise1Plus.C_chr_30420
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_30420
N
0.000
e_gw1.10.53.1
Trichoderma virens
e_gw1.10.53.1
N
0.000
e_gw1.15.72.1
Trichoderma atroviride
e_gw1.15.72.1
N
0.000
e_gw1.17.287.1
Trichoderma reesei
e_gw1.17.287.1
N
0.000
fgenesh1_pg.4_#_772
Myceliophthora thermophila
fgenesh1_pg.4_#_772
N
0.000
fgenesh1_pm.00082_#_76
Aspergillus carbonarius
fgenesh1_pm.00082_#_76
N
0.000
FGSG_05444
Fusarium graminearum
FGSG_05444
N
0.000
FOXG_09455
Fusarium oxysporum
FOXG_09455
N
0.000
FVEG_07083
Fusarium verticillioides
FVEG_07083
N
0.000
GLRG_03643
Colletotrichum graminicola
GLRG_03643
N
0.000
GSTUMT00008077001
Tuber melanosporum
GSTUMT00008077001
N
0.000
MCYG_03534
Microsporum canis
MCYG_03534
N
0.000
MGYG_03143
Microsporum gypseum
MGYG_03143
N
0.000
NCU06459
Neurospora crassa
NCU06459
N
0.000
PABG_04754
Paracoccidioides brasiliensis
PABG_04754
N
0.000
Pa_7_9880
Podospora anserina
Pa_7_9880
N
0.000
Pc22g08880
Penicillium chrysogenum
Pc22g08880
N
0.000
PMAA_071470
Penicillium marneffei
PMAA_071470
N
0.000
PTRG_09392
Pyrenophora tritici repentis
PTRG_09392
N
0.000
SNOG_13871
Stagonospora nodorum
SNOG_13871
N
0.000
SS1G_13716
Sclerotinia sclerotiorum
SS1G_13716
N
0.000
TEQG_01254
Trichophyton equinum
TEQG_01254
N
0.000
TERG_04964
Trichophyton rubrum
TERG_04964
N
0.000
TESG_05970
Trichophyton tonsurans
TESG_05970
N
0.000
UREG_00743
Uncinocarpus reesii
UREG_00743
N
0.000
VDAG_06364
Verticillium dahliae
VDAG_06364
N
0.000
VDBG_08703
Verticillium albo atrum
VDBG_08703
N
0.000