XM_002879157.1 (Arabidopsis lyrata)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 fgenesh2_kg.4__893__AT2G29140.1 T24364_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.4__893__AT2G29140.1 PUF 635 669
fgenesh2_kg.4__893__AT2G29140.1 PUF 672 704
fgenesh2_kg.4__893__AT2G29140.1 PUF 707 741
fgenesh2_kg.4__893__AT2G29140.1 PUF 743 777
fgenesh2_kg.4__893__AT2G29140.1 PUF 779 814
fgenesh2_kg.4__893__AT2G29140.1 PUF 821 849
fgenesh2_kg.4__893__AT2G29140.1 PUF 852 886
fgenesh2_kg.4__893__AT2G29140.1 PUF 899 928

Links

Other PUF family RBPs
Other Arabidopsis lyrata RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30143.m001164 Ricinus communis 30143.m001164 N 0.812
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.761
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.775
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.771
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.771
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.808
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.895
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.880
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.873
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.873
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.869
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.786
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.865
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.869
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.876
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.873
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.873
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.869
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.767
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.771
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.819
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.876
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.815
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.761
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.775
MDP0000191652 Malus x domestica MDP0000191652 N 0.853
MDP0000314338 Malus x domestica MDP0000314338 N 0.808
MDP0000319167 Malus x domestica MDP0000319167 N 0.880
MDP0000776183 Malus x domestica MDP0000776183 N 0.812
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.858
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.862
mgf015234m Mimulus guttatus mgf015234m N 0.783
mgf015734m Mimulus guttatus mgf015734m N 0.847
PK00601.1 Cannabis sativa PK00601.1 N 0.812
PK21390.1 Cannabis sativa PK21390.1 N 0.872
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.797
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.808
ppa000626m Prunus persica ppa000626m N 0.812
ppa000627m Prunus persica ppa000627m N 0.876
SB03G039600 Sorghum bicolor Sb03g039600 N 0.819
SB09G001090 Sorghum bicolor Sb09g001090 N 0.771