Glyma12g06430.1 (Glycine max)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Glyma12g06430.1 T24889_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma12g06430.1 PUF 697 731
Glyma12g06430.1 PUF 733 766
Glyma12g06430.1 PUF 769 803
Glyma12g06430.1 PUF 805 839
Glyma12g06430.1 PUF 841 876
Glyma12g06430.1 PUF 878 912
Glyma12g06430.1 PUF 914 948
Glyma12g06430.1 PUF 961 990

Links

Other PUF family RBPs
Other Glycine max RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.764
30143.m001162 Ricinus communis 30143.m001162 N 0.826
30143.m001164 Ricinus communis 30143.m001164 N 0.866
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.876
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.862
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.873
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.722
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.811
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.821
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.814
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.814
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.726
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.733
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.859
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.928
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.920
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.909
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.909
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.772
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.909
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.833
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.747
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.762
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.777
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.746
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.728
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.787
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.873
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.873
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.755
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.975
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.982
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.982
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.989
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.945
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.744
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.810
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.806
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.726
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.743
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.877
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.920
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.779
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.848
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.811
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.733
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.821
MDP0000119814 Malus x domestica MDP0000119814 N 0.711
MDP0000176743 Malus x domestica MDP0000176743 N 0.744
MDP0000191652 Malus x domestica MDP0000191652 N 0.865
MDP0000314338 Malus x domestica MDP0000314338 N 0.848
MDP0000319167 Malus x domestica MDP0000319167 N 0.902
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.740
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.935
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.938
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.797
mgf011401m Mimulus guttatus mgf011401m N 0.744
mgf015234m Mimulus guttatus mgf015234m N 0.815
mgf015734m Mimulus guttatus mgf015734m N 0.891
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.727
PK00601.1 Cannabis sativa PK00601.1 N 0.862
PK01617.1 Cannabis sativa PK01617.1 N 0.773
PK21390.1 Cannabis sativa PK21390.1 N 0.924
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.873
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.764
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.851
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.899
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.866
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.751
ppa000626m Prunus persica ppa000626m N 0.862
ppa000627m Prunus persica ppa000627m N 0.927
ppa000731m Prunus persica ppa000731m N 0.776
SB03G039600 Sorghum bicolor Sb03g039600 N 0.862
SB04G037410 Sorghum bicolor Sb04g037410 N 0.729
SB09G001090 Sorghum bicolor Sb09g001090 N 0.814
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.715
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.873