Medtr4g084270 (Medicago truncatula)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Medtr4g084270 T24975_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr4g084270.1 PUF 690 724
Medtr4g084270.1 PUF 726 759
Medtr4g084270.1 PUF 762 796
Medtr4g084270.1 PUF 798 832
Medtr4g084270.1 PUF 834 868
Medtr4g084270.1 PUF 871 905
Medtr4g084270.1 PUF 907 941
Medtr4g084270.1 PUF 954 983

Links

Other PUF family RBPs
Other Medicago truncatula RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.775
30143.m001162 Ricinus communis 30143.m001162 N 0.819
30143.m001164 Ricinus communis 30143.m001164 N 0.855
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.869
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.851
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.859
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.707
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.796
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.806
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.802
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.802
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.728
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.733
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.847
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.913
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.902
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.895
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.895
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.771
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.894
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.826
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.750
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.761
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.776
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.742
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.730
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.783
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.862
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.859
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.755
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.942
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.938
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.938
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.938
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.942
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.931
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.740
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.795
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.791
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.732
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.721
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.852
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.913
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.775
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.847
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.796
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.732
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.806
MDP0000119814 Malus x domestica MDP0000119814 N 0.000
MDP0000176743 Malus x domestica MDP0000176743 N 0.736
MDP0000191652 Malus x domestica MDP0000191652 N 0.861
MDP0000319167 Malus x domestica MDP0000319167 N 0.898
MDP0000776183 Malus x domestica MDP0000776183 N 0.833
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.733
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.938
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.786
mgf011401m Mimulus guttatus mgf011401m N 0.739
mgf015234m Mimulus guttatus mgf015234m N 0.818
mgf015734m Mimulus guttatus mgf015734m N 0.876
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.722
PK00601.1 Cannabis sativa PK00601.1 N 0.844
PK01617.1 Cannabis sativa PK01617.1 N 0.758
PK21390.1 Cannabis sativa PK21390.1 N 0.927
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.870
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.745
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.844
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.877
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.858
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.732
ppa000626m Prunus persica ppa000626m N 0.844
ppa000627m Prunus persica ppa000627m N 0.912
ppa000731m Prunus persica ppa000731m N 0.761
SB03G039600 Sorghum bicolor Sb03g039600 N 0.855
SB04G037410 Sorghum bicolor Sb04g037410 N 0.736
SB09G001090 Sorghum bicolor Sb09g001090 N 0.799
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.000
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.862