CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B7NZJ5_RABIT
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000007050
T39652_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000006100
RRM
155
223
VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPI
ENSOCUP00000006100
RRM
252
322
LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK
ENSOCUP00000006100
RRM
445
502
EIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMIT
ENSOCUP00000016263
RRM
156
224
VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPI
ENSOCUP00000016263
RRM
253
323
LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK
ENSOCUP00000016263
RRM
446
503
EIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMIT
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
67 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL006473
Aedes aegypti
AAEL006473
I
0.000
AAH42354
Xenopus laevis
AAH42354
I
0.000
AAI23123
Xenopus laevis
AAI23123
I
0.000
AAI28932
Xenopus laevis
AAI28932
I
0.000
AGAP010496
Anopheles gambiae
AGAP010496
I
0.000
amel4_ncbi_hmm5595
Apis mellifera
amel4_ncbi_hmm5595
I
0.000
Ame_R003447
Ailuropoda melanoleuca
Ame_R003447
I
0.000
BGIBMGA013096
Bombyx mori
BGIBMGA013096
I
0.000
CPIJ008786
Culex quinquefasciatus
CPIJ008786
I
0.000
CpipJ_CPIJ008786
Culex pipiens
CpipJ_CPIJ008786
I
0.000
DGIL_AUG5s14011g9t1
Acyrtosiphon pisum
DGIL_AUG5s14011g9t1
I
0.000
SRSF1
Anolis carolinensis
ENSACAG00000005542
I
0.000
SFRS1_BOVIN
Bos taurus
ENSBTAG00000014766
I
0.000
SRSF1
Canis familiaris
ENSCAFG00000017430
I
0.000
SRSF1
Choloepus hoffmanni
ENSCHOG00000001899
I
0.000
ENSCING00000007375
Ciona intestinalis
ENSCING00000007375
I
0.000
LOC100400391
Callithrix jacchus
ENSCJAG00000008111
I
0.000
LOC100392422
Callithrix jacchus
ENSCJAG00000014041
I
0.000
LOC100392422
Callithrix jacchus
ENSCJAG00000035311
I
0.000
SRSF1
Cavia porcellus
ENSCPOG00000011760
I
0.000
ENSCSAVG00000006093
Ciona savignyi
ENSCSAVG00000006093
I
0.000
srsf1a
Danio rerio
ENSDARG00000057691
I
0.000
LOC100056763
Equus caballus
ENSECAG00000016654
I
0.000
SRSF1
Erinaceus europaeus
ENSEEUG00000009255
I
0.000
SRSF1
Echinops telfairi
ENSETEG00000005349
I
0.000
SRSF1
Homo sapiens
ENSG00000136450
D
0.000
ENSGACG00000011094
Gasterosteus aculeatus
ENSGACG00000011094
I
0.000
ENSGACG00000020621
Gasterosteus aculeatus
ENSGACG00000020621
I
0.000
SRSF1
Gorilla gorilla
ENSGGOG00000004386
I
0.000
SRSF1
Loxodonta africana
ENSLAFG00000025743
I
0.000
SRSF1
Microcebus murinus
ENSMICG00000013639
I
0.000
SRSF1
Myotis lucifugus
ENSMLUG00000011040
I
0.000
ENSMMUG00000003260
Macaca mulatta
ENSMMUG00000003260
I
0.000
SRSF1
Macaca mulatta
ENSMMUG00000004725
I
0.000
SRSF1
Monodelphis domestica
ENSMODG00000014781
I
0.000
Srsf1
Mus musculus
ENSMUSG00000018379
I
0.000
ENSMUSG00000090049
Mus musculus
ENSMUSG00000090049
I
0.000
ENSOCUG00000017678
Oryctolagus cuniculus
ENSOCUG00000017678
I
0.000
ENSORLG00000004580
Oryzias latipes
ENSORLG00000004580
I
0.000
SRSF1
Procavia capensis
ENSPCAG00000005199
I
0.000
ENSPPYG00000008240
Pongo pygmaeus
ENSPPYG00000008240
I
0.000
SRSF1
Pan troglodytes
ENSPTRG00000009443
I
0.000
D4A9L2_RAT
Rattus norvegicus
ENSRNOG00000042643
I
0.000
SRSF1
Sorex araneus
ENSSARG00000010949
I
0.000
SRSF1
Sus scrofa
ENSSSCG00000017626
I
0.000
SRSF1
Spermophilus tridecemlineatus
ENSSTOG00000000243
I
0.000
SRSF1
Tupaia belangeri
ENSTBEG00000015378
I
0.000
SRSF1
Tetraodon nigroviridis
ENSTNIG00000009993
I
0.000
ENSTNIG00000016223
Tetraodon nigroviridis
ENSTNIG00000016223
I
0.000
ENSTRUG00000003691
Takifugu rubripes
ENSTRUG00000003691
I
0.000
SRSF1
Takifugu rubripes
ENSTRUG00000017058
I
0.000
SRSF1
Tarsius syrichta
ENSTSYG00000013899
I
0.000
SRSF1
Vicugna pacos
ENSVPAG00000010094
I
0.000
srsf1
Xenopus tropicalis
ENSXETG00000008954
I
0.000
estExt_fgenesh2_pm.C_1180016
Branchiostoma floridae
estExt_fgenesh2_pm.C_1180016
I
0.000
e_gw.425.15.1
Branchiostoma floridae
e_gw.425.15.1
I
0.000
e_gw1.83.149.1
Daphnia pulex
e_gw1.83.149.1
I
0.000
SF2
Drosophila melanogaster
FBgn0040284
D
0.000
GA20008-RA
Drosophila pseudoobscura
FBgn0080004
I
0.000
GF16525
Drosophila ananassae
FBgn0093546
I
0.000
GG20059
Drosophila erecta
FBgn0112258
I
0.000
GH18077
Drosophila grimshawi
FBgn0125545
I
0.000
GI24651
Drosophila mojavensis
FBgn0147373
I
0.000
GM15444
Drosophila sechellia
FBgn0170362
I
0.000
GJ23504
Drosophila virilis
FBgn0210602
I
0.000
GK13511
Drosophila willistoni
FBgn0215519
I
0.000
GE26323
Drosophila yakuba
FBgn0243353
I
0.000
fgenesh1_pg.scaffold_37000136
Nematostella vectensis
fgenesh1_pg.scaffold_37000136
I
0.000
fgenesh2_pg.scaffold_118000083
Branchiostoma floridae
fgenesh2_pg.scaffold_118000083
I
0.000
gw.425.18.1
Branchiostoma floridae
gw.425.18.1
I
0.000
gw1.25.268.1
Lottia gigantea
gw1.25.268.1
I
0.000
ISCW014398
Ixodes scapularis
ISCW014398
I
0.000
LOAG_10275
Loa loa
LOAG_10275
I
0.000
Minc04015
Meloidogyne incognita
Minc04015
I
0.000
Minc06188
Meloidogyne incognita
Minc06188
I
0.000
nasonia_NCBI_hmm519234
Nasonia vitripennis
nasonia_NCBI_hmm519234
I
0.000
Ppa-rsp-3
Pristionchus pacificus
PPA25378
I
0.000
Sjc_0030490
Schistosoma japonicum
Sjc_0030490
I
0.000
Smp_185230
Schistosoma mansoni
Smp_185230
I
0.000