srsf5 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000002211 T42825_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.729
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.729
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.721
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.721
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000004701 RRM 6 68
ENSXETP00000004701 RRM 112 177
ENSXETP00000057107 RRM 6 68
ENSXETP00000057107 RRM 112 177

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

139 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62194 Helobdella robusta 62194 I 0.705
AAH44085 Xenopus laevis AAH44085 I 0.783
AAH44265 Xenopus laevis AAH44265 I 0.705
AAH46668 Xenopus laevis AAH46668 I 0.721
AAH71160 Xenopus laevis AAH71160 I 0.806
AGAP004592 Anopheles gambiae AGAP004592 I 0.705
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.721
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.977
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.752
Aqu1.218342 Amphimedon queenslandica Aqu1.218342 N 0.713
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.721
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.721
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.705
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.721
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.984
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.806
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.736
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.977
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.752
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.977
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.721
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.721
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.752
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.977
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.729
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.705
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.977
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.752
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.713
srsf6a Danio rerio ENSDARG00000013729 I 0.721
srsf6b Danio rerio ENSDARG00000016783 I 0.705
srsf5b Danio rerio ENSDARG00000027734 I 0.953
srsf5a Danio rerio ENSDARG00000029818 I 0.806
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.752
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.729
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.729
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.752
Srsf5 Dipodomys ordii ENSDORG00000003989 I 0.798
LOC100053264 Equus caballus ENSECAG00000026873 I 0.977
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.752
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.713
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.969
SRSF5 Felis catus ENSFCAG00000008848 I 0.977
SRSF5 Homo sapiens ENSG00000100650 D 0.977
SRSF4 Homo sapiens ENSG00000116350 I 0.752
SRSF6 Homo sapiens ENSG00000124193 I 0.729
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.752
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.736
SRSF5 Gasterosteus aculeatus ENSGACG00000007834 I 0.829
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.829
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.969
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.744
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.729
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.977
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.752
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.969
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.721
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.752
SRSF5 Meleagris gallopavo ENSMGAG00000011835 N 0.705
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.744
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.721
SRSF5 Microcebus murinus ENSMICG00000009661 I 0.884
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.977
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.721
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.752
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.977
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.721
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.752
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.984
Srsf6 Mus musculus ENSMUSG00000016921 I 0.729
Srsf5 Mus musculus ENSMUSG00000021134 I 0.977
Srsf4 Mus musculus ENSMUSG00000028911 I 0.752
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.930
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.752
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.977
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.977
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.977
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.744
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.705
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.822
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.752
SRSF5 Procavia capensis ENSPCAG00000004405 N 0.721
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.752
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.721
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.752
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.977
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.729
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.752
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.977
SRSF5 Pteropus vampyrus ENSPVAG00000009828 I 0.853
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.729
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.977
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.729
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.752
SRSF5 Sorex araneus ENSSARG00000001059 I 0.860
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.977
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.752
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.946
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.729
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.984
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.760
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.744
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.721
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.744
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.946
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.713
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.798
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.744
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.946
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.977
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.744
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.752
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.977
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.977
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.721
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.806
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.721
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.713
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.744
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.791
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.721
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.729
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.729
B52 Drosophila melanogaster FBgn0004587 D 0.729
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.721
GF17608 Drosophila ananassae FBgn0094626 I 0.729
GH18528 Drosophila grimshawi FBgn0125995 I 0.721
GI22065 Drosophila mojavensis FBgn0144794 I 0.721
GL23543 Drosophila persimilis FBgn0161133 I 0.721
GJ24113 Drosophila virilis FBgn0211197 I 0.721
GK13948 Drosophila willistoni FBgn0215954 I 0.729
ISCW010321 Ixodes scapularis ISCW010321 I 0.713
ISCW010322 Ixodes scapularis ISCW010322 I 0.705
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.713
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.713
PHUM290500 Pediculus humanus PHUM290500 I 0.729
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.760
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.760