srsf5 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000002211 T42825_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.729
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.729
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.721
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.721
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000004701 RRM 6 68
ENSXETP00000004701 RRM 112 177
ENSXETP00000057107 RRM 6 68
ENSXETP00000057107 RRM 112 177

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

139 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH74368 Xenopus laevis AAH74368 N 0.000
Ame_R001963 Ailuropoda melanoleuca Ame_R001963 N 0.000
MKRN1 Anolis carolinensis ENSACAG00000010934 N 0.000
ENSCAFG00000003953 Canis familiaris ENSCAFG00000003953 N 0.000
MKRN1 Choloepus hoffmanni ENSCHOG00000011015 N 0.000
MKRN1 Callithrix jacchus ENSCJAG00000004068 N 0.000
ENSCPOG00000000948 Cavia porcellus ENSCPOG00000000948 N 0.000
mkrn1 Danio rerio ENSDARG00000041665 N 0.000
LOC100065893 Equus caballus ENSECAG00000017929 N 0.000
MKRN1 Felis catus ENSFCAG00000013043 N 0.000
MKRN1 Homo sapiens ENSG00000133606 N 0.000
MKRN1 Gasterosteus aculeatus ENSGACG00000019227 N 0.000
Q9PTI4_CHICK Gallus gallus ENSGALG00000012852 N 0.000
ENSGGOG00000023977 Gorilla gorilla ENSGGOG00000023977 N 0.000
MKRN1 Loxodonta africana ENSLAFG00000018408 N 0.000
MKRN1_MACEU Macropus eugenii ENSMEUG00000007399 N 0.000
MKRN1 Meleagris gallopavo ENSMGAG00000013208 N 0.000
MKRN1 Microcebus murinus ENSMICG00000002114 N 0.000
ENSMMUG00000001017 Macaca mulatta ENSMMUG00000001017 N 0.000
MKRN1 Macaca mulatta ENSMMUG00000010420 N 0.000
ENSMODG00000013686 Monodelphis domestica ENSMODG00000013686 N 0.000
Mkrn1 Mus musculus ENSMUSG00000029922 N 0.000
ENSOCUG00000010180 Oryctolagus cuniculus ENSOCUG00000010180 N 0.000
ENSOGAG00000009877 Otolemur garnettii ENSOGAG00000009877 N 0.000
MKRN1 Ochotona princeps ENSOPRG00000010353 N 0.000
MKRN1 Oryzias latipes ENSORLG00000012765 N 0.000
MKRN1 Procavia capensis ENSPCAG00000014683 N 0.000
ENSPPYG00000018057 Pongo pygmaeus ENSPPYG00000018057 N 0.000
ENSPPYG00000020255 Pongo pygmaeus ENSPPYG00000020255 N 0.000
XR_024878.1 Pan troglodytes ENSPTRG00000019766 N 0.000
Q68FR1_RAT Rattus norvegicus ENSRNOG00000009280 N 0.000
MKRN1 Sorex araneus ENSSARG00000013683 N 0.000
MKRN1 Sus scrofa ENSSSCG00000016498 N 0.000
MKRN1 Taeniopygia guttata ENSTGUG00000011669 N 0.000
MKRN1 Tetraodon nigroviridis ENSTNIG00000007231 N 0.000
NP_001072050.1 Takifugu rubripes ENSTRUG00000012057 N 0.000
MKRN1 Tarsius syrichta ENSTSYG00000009996 N 0.000
Q6GLT5 Xenopus laevis Q6GLT5 N 0.000