B9N7F5_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0001s16630 T45417_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s16630.1 RRM 60 126
POPTR_0001s16630.1 RRM 145 215
POPTR_0001s16630.1 RRM 266 332

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28226.m000878 Ricinus communis 28226.m000878 I 0.731
29727.m000492 Ricinus communis 29727.m000492 I 0.947
29739.m003726 Ricinus communis 29739.m003726 I 0.830
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.883
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.782
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.859
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.728
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.767
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.758
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.748
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.782
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.932
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.932
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.932
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.845
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.932
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.932
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.932
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.932
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.932
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.932
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.932
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.932
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.845
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.932
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.736
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.835
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.883
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.898
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.782
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.859
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.927
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.830
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.922
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.793
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.806
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.738
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.869
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.917
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.745
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.707
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.712
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.782
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.738
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.767
MDP0000147538 Malus x domestica MDP0000147538 N 0.820
MDP0000149711 Malus x domestica MDP0000149711 N 0.879
MDP0000871411 Malus x domestica MDP0000871411 I 0.850
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.721
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.903
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.773
mgf001763m Mimulus guttatus mgf001763m I 0.850
mgf004534m Mimulus guttatus mgf004534m N 0.888
mgf015309m Mimulus guttatus mgf015309m N 0.889
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.796
PK20770.1 Cannabis sativa PK20770.1 I 0.932
PK22818.1 Cannabis sativa PK22818.1 I 0.820
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.956
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.850
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.726
ppa006170m Prunus persica ppa006170m I 0.937
ppa006248m Prunus persica ppa006248m I 0.764
ppa006419m Prunus persica ppa006419m I 0.850
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.791
SB07G027050 Sorghum bicolor Sb07g027050 N 0.738
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.888