B9GI27_POPTR (Populus trichocarpa)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		POPTR_0001s26250 T00744_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s26250.1 CCCH ZF 190 212
POPTR_0001s26250.1 RRM 291 350

Links

Other CCCH ZF,RRM family RBPs
Other Populus trichocarpa RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.791
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.807
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.867
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.795
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.867
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.843
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.867
mgf014647m Mimulus guttatus mgf014647m N 0.855
mgf002273m Mimulus guttatus mgf002273m N 0.824
mgf000973m Mimulus guttatus mgf000973m N 0.776
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.867
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.867
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.770
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.867
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.867
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.770
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.726
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.714
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.845
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.831
ppa023263m Prunus persica ppa023263m N 0.880
ppa019338m Prunus persica ppa019338m N 0.701
ppa003564m Prunus persica ppa003564m N 0.729
ppa002413m Prunus persica ppa002413m N 0.881
ppa002383m Prunus persica ppa002383m N 0.802
MDP0000906147 Malus x domestica MDP0000906147 N 0.701
MDP0000259773 Malus x domestica MDP0000259773 N 0.807
MDP0000256775 Malus x domestica MDP0000256775 N 0.807
MDP0000243086 Malus x domestica MDP0000243086 N 0.867
MDP0000220601 Malus x domestica MDP0000220601 N 0.831
MDP0000214614 Malus x domestica MDP0000214614 N 0.729
MDP0000164538 Malus x domestica MDP0000164538 N 0.814
MDP0000120462 Malus x domestica MDP0000120462 N 0.905
MDP0000120231 Malus x domestica MDP0000120231 N 0.893
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.867
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.791
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.805
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.000
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.714
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.867
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.744
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.867
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.867
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.880
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.892
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.869
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.867
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.805
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.880
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.855
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.831
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.867
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.880
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.892
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.805
PK20504.1 Cannabis sativa PK20504.1 N 0.706
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.880
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.747
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.855
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.855
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.855
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.855
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.701
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.726
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.893
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.893
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.756
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.862
30169.m006472 Ricinus communis 30169.m006472 N 0.767
30169.m006471 Ricinus communis 30169.m006471 N 0.893
SB05G001540 Sorghum bicolor Sb05g001540 N 0.795
SB02G043180 Sorghum bicolor Sb02g043180 N 0.867
SB01G036490 Sorghum bicolor Sb01g036490 N 0.867
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.701
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.940
PK18074.1 Cannabis sativa PK18074.1 N 0.779