APUM2 (Arabidopsis thaliana)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 AT2G29190-TAIR-G T24019_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT2G29190.1-P PUF 634 668
AT2G29190.1-P PUF 670 704
AT2G29190.1-P PUF 706 740
AT2G29190.1-P PUF 742 776
AT2G29190.1-P PUF 778 813
AT2G29190.1-P PUF 821 848
AT2G29190.1-P PUF 851 885
AT2G29190.1-P PUF 898 927

Links

Other PUF family RBPs
Other Arabidopsis thaliana RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000731m Prunus persica ppa000731m N 0.757
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.862
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.862
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.865
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.859
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.855
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.729
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.737
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.740
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.747
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.000
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.714
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.732
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.783
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.851
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.754
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.877
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.848
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.725
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.743
ppa000627m Prunus persica ppa000627m N 0.855
ppa000626m Prunus persica ppa000626m N 0.808
MDP0000776183 Malus x domestica MDP0000776183 N 0.808
MDP0000319167 Malus x domestica MDP0000319167 N 0.870
MDP0000314338 Malus x domestica MDP0000314338 N 0.804
MDP0000176743 Malus x domestica MDP0000176743 N 0.721
MDP0000119814 Malus x domestica MDP0000119814 N 0.000
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.851
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.848
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.740
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.718
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.760
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.756
mgf015734m Mimulus guttatus mgf015734m N 0.826
mgf015234m Mimulus guttatus mgf015234m N 0.779
mgf011401m Mimulus guttatus mgf011401m N 0.728
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.877
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.884
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.895
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.815
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.862
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.812
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.978
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.967
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.718
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.756
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.756
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.764
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.750
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.700
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.970
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.945
PK21390.1 Cannabis sativa PK21390.1 N 0.855
PK01617.1 Cannabis sativa PK01617.1 N 0.751
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.750
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.733
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.764
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.804
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.724
30143.m001164 Ricinus communis 30143.m001164 N 0.804
30143.m001162 Ricinus communis 30143.m001162 N 0.764
29595.m000292 Ricinus communis 29595.m000292 N 0.736
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.967
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.000
SB09G001090 Sorghum bicolor Sb09g001090 N 0.760
SB04G037410 Sorghum bicolor Sb04g037410 N 0.726
SB03G039600 Sorghum bicolor Sb03g039600 N 0.819
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.726
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.801
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.837
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.793
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.722
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.830
PK00601.1 Cannabis sativa PK00601.1 N 0.804