scaffold_4100004.1 (Arabidopsis lyrata)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 scaffold_4100004.1 T24464_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_4100004.1 PUF 165 199
scaffold_4100004.1 PUF 202 234
scaffold_4100004.1 PUF 237 271
scaffold_4100004.1 PUF 273 307
scaffold_4100004.1 PUF 309 344
scaffold_4100004.1 PUF 351 379
scaffold_4100004.1 PUF 382 416
scaffold_4100004.1 PUF 429 458

Links

Other PUF family RBPs
Other Arabidopsis lyrata RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000731m Prunus persica ppa000731m N 0.746
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.714
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.869
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.873
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.873
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.876
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.869
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.865
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.718
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.737
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.740
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.744
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.710
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.725
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.786
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.869
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.749
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.739
mgf011401m Mimulus guttatus mgf011401m N 0.728
ppa000627m Prunus persica ppa000627m N 0.876
ppa000626m Prunus persica ppa000626m N 0.812
MDP0000776183 Malus x domestica MDP0000776183 N 0.812
MDP0000319167 Malus x domestica MDP0000319167 N 0.880
MDP0000314338 Malus x domestica MDP0000314338 N 0.808
MDP0000191652 Malus x domestica MDP0000191652 N 0.853
MDP0000176743 Malus x domestica MDP0000176743 N 0.710
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.764
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.862
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.858
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.729
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.722
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.771
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.767
mgf015734m Mimulus guttatus mgf015734m N 0.847
mgf015234m Mimulus guttatus mgf015234m N 0.783
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.873
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.873
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.880
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.815
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.876
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.819
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.720
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.981
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 1.000
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.722
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.771
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.771
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.775
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.761
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.981
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.967
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.967
PK21390.1 Cannabis sativa PK21390.1 N 0.872
PK01617.1 Cannabis sativa PK01617.1 N 0.744
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.761
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.733
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.895
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.808
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.713
30143.m001164 Ricinus communis 30143.m001164 N 0.812
30143.m001162 Ricinus communis 30143.m001162 N 0.779
29595.m000292 Ricinus communis 29595.m000292 N 0.732
SB09G001090 Sorghum bicolor Sb09g001090 N 0.771
SB04G037410 Sorghum bicolor Sb04g037410 N 0.726
SB03G039600 Sorghum bicolor Sb03g039600 N 0.819
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.722
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.808
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.855
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.797
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.721
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.830
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.775
PK00601.1 Cannabis sativa PK00601.1 N 0.812