PABPN1L (Otolemur garnettii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOGAG00000000433 T39802_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000000389 RRM 141 210

Links

Other RRM family RBPs
Other Otolemur garnettii RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1 Homo sapiens ENSG00000100836 D 0.718
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.831
GG23338 Drosophila erecta FBgn0115489 I 0.000
GH21908 Drosophila grimshawi FBgn0129369 I 0.000
GI19259 Drosophila mojavensis FBgn0141998 I 0.000
GL17107 Drosophila persimilis FBgn0154711 I 0.000
GM21011 Drosophila sechellia FBgn0175892 I 0.000
GD10545 Drosophila simulans FBgn0182316 I 0.000
GJ22134 Drosophila virilis FBgn0209248 I 0.000
GK23192 Drosophila willistoni FBgn0225154 I 0.000
PHUM037550 Pediculus humanus PHUM037550 I 0.000
SNAPOd2T00003132001 Oikopleura dioica SNAPOd2T00003132001 I 0.000
SNAPOd2T00018428001 Oikopleura dioica SNAPOd2T00018428001 I 0.000
GF13666 Drosophila ananassae FBgn0090694 I 0.000
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.000
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.718
EPAB2_RAT Rattus norvegicus ENSRNOG00000029558 I 0.831
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.718
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.718
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.729
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.000
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.729
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.000
pabpn1l Xenopus tropicalis ENSXETG00000011258 I 0.718
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.000
Pabp2 Drosophila melanogaster FBgn0005648 I 0.000
Pabp2 Drosophila yakuba FBgn0068105 I 0.000
156918 Helobdella robusta 156918 I 0.000
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.000
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.704
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.000
2JWN_A Xenopus laevis 2JWN_A I 0.718
2JWN_B Xenopus laevis 2JWN_B I 0.718
AAG36902 Xenopus laevis AAG36902 I 0.704
AAH45063 Xenopus laevis AAH45063 I 0.704
AAH73657 Xenopus laevis AAH73657 I 0.704
AAI70309 Xenopus laevis AAI70309 I 0.718
AAI70311 Xenopus laevis AAI70311 I 0.718
AAR26262 Xenopus laevis AAR26262 I 0.704
AAR26263 Xenopus laevis AAR26263 I 0.718
Q6TY21 Xenopus laevis Q6TY21 I 0.718
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.704
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.000
Smp_007630 Schistosoma mansoni Smp_007630 I 0.000
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.000
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.000
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.000
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.000
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.000
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.704
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.757
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.714
PredSwiss_CON654.3 Pneumocystis carinii PredSwiss_CON654.3 I 0.000
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.000
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.000
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.718
Q9DDY9 Xenopus laevis Q9DDY9 I 0.704
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.845
Bm1_48895 Brugia malayi Bm1_48895 I 0.700
CRE07990 Caenorhabditis remanei CRE07990 I 0.000
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.000
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.803
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.718
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.718
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.718
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.000
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.718
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.718
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.857
pabpn1 Danio rerio ENSDARG00000045373 I 0.743
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.718
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.000
CJA15148 Caenorhabditis japonica CJA15148 I 0.000
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.000
LOAG_03634 Loa loa LOAG_03634 I 0.700
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.700
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.000
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.000
AAEL015143 Aedes aegypti AAEL015143 I 0.000
AGAP005117 Anopheles gambiae AGAP005117 I 0.000
pabp-2 Caenorhabditis elegans C17E4.5 I 0.000
CBG03741 Caenorhabditis briggsae CBG03741 I 0.000
CBN00953 Caenorhabditis brenneri CBN00953 I 0.000
CBN10290 Caenorhabditis brenneri CBN10290 I 0.000
CBN16301 Caenorhabditis brenneri CBN16301 I 0.000
LOC100051357 Equus caballus ENSECAG00000000378 I 0.886
LOC100055599 Equus caballus ENSECAG00000011652 I 0.718
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.718
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.817
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.000
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.718
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.718
PABPN1L Ochotona princeps ENSOPRG00000005597 I 0.873
PABPN1L Oryzias latipes ENSORLG00000005534 I 0.000
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.729
PABPN1 Procavia capensis ENSPCAG00000005902 I 0.000
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.718
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.845
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.718
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.732
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.000
PABPN1L Homo sapiens ENSG00000205022 I 0.845
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.729
PABPN1L Gasterosteus aculeatus ENSGACG00000015428 I 0.000
PABPN1 Gallus gallus ENSGALG00000006242 I 0.831
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.718
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.845
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.718
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.718
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.845
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.718
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.845
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.718