69117 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 69117 T48843_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
69117 RRM 38 101
69117 RRM 146 208

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

90 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB2 Homo sapiens ENSG00000137449 D 0.716
orb2 Drosophila melanogaster FBgn0262573 D 0.707
CPEB4 Homo sapiens ENSG00000113742 D 0.703
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.716
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.000
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.703
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.701
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.000
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.703
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.000
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.000
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.703
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.701
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.000
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.703
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.703
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.000
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.701
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.703
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.000
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.000
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.703
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.716
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.000
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.703
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.716
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.000
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.000
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.703
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.712
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.000
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.716
CPEB4 Sorex araneus ENSSARG00000013389 I 0.000
CPEB2 Sorex araneus ENSSARG00000010559 I 0.000
CPEB3 Sorex araneus ENSSARG00000001994 I 0.000
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.703
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.000
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.000
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.703
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.000
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.716
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.000
79994 Helobdella robusta 79994 I 0.000
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.740
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.733
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.000
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.731
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.718
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.726
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.724
Sjc_0029950 Schistosoma japonicum Sjc_0029950 I 0.000
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.709
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.000
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.716
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.703
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.711
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.000
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.711
111676 Helobdella robusta 111676 I 0.000
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.748
PHUM335520 Pediculus humanus PHUM335520 I 0.714
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.000
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.000
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.000
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.000
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.000
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.000
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.707
GF10140 Drosophila ananassae FBgn0087181 I 0.714
GG15051 Drosophila erecta FBgn0107305 I 0.707
GH16131 Drosophila grimshawi FBgn0123602 I 0.707
GI12400 Drosophila mojavensis FBgn0135157 I 0.707
GL20808 Drosophila persimilis FBgn0158403 I 0.707
GJ12289 Drosophila virilis FBgn0199538 I 0.707
GK17460 Drosophila willistoni FBgn0219459 I 0.707
GE21274 Drosophila yakuba FBgn0238542 I 0.707
ISCW010113 Ixodes scapularis ISCW010113 I 0.726
ADH10187 Xenopus laevis ADH10187 I 0.703
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.731
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.716
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.703
CPEB2 Danio rerio ENSDARG00000052604 I 0.000
cpeb3 Danio rerio ENSDARG00000060103 I 0.000
CPEB4 Danio rerio ENSDARG00000060495 I 0.703
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.716
CPEB3 Equus caballus ENSECAG00000000077 I 0.000
CPEB2 Equus caballus ENSECAG00000008722 I 0.716
LOC100058918 Equus caballus ENSECAG00000016921 I 0.703
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.703
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.000
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.000
CPEB3 Homo sapiens ENSG00000107864 I 0.000
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.000
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.707
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.703
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.703
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.703
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.716
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.722
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.000
AAEL012065 Aedes aegypti AAEL012065 I 0.000
AGAP002296 Anopheles gambiae AGAP002296 I 0.729
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.000
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.709
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.703
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.703
CPEB3 Bos taurus ENSBTAG00000015450 I 0.000
CPEB2 Bos taurus ENSBTAG00000019847 I 0.716
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.000
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.716
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.000
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.000
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.716
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.731
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.000
CPEB3 Gallus gallus ENSGALG00000006912 I 0.000
CPEB4 Gallus gallus ENSGALG00000014074 I 0.000
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.703
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.000
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.703
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.000
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.716
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.716
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.000
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.000
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.716
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.703
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.000
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.000
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.703
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.716
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.703
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.000
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.703
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.716
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.000
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.716
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.000
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.703
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.716
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.000
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.703
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.716
CPEB2 Gallus gallus ENSGALG00000014516 I 0.716
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.000
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.000
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.000
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.716
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.703
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.000
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.000
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.000
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.716
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.703