cassava31596.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava31596.valid.m1 T49298_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava31596.valid.m1 RRM 55 121
cassava31596.valid.m1 RRM 140 210
cassava31596.valid.m1 RRM 262 329

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.736
ppa006248m Prunus persica ppa006248m I 0.784
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.859
cassava34810.m1 Manihot esculenta cassava34810.m1 I 1.000
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 1.000
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 1.000
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.971
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.971
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.971
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.971
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.971
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.869
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.971
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.917
e_gw1.84.182.1 Physcomitrella patens e_gw1.84.182.1 I 0.716
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.947
ppa006170m Prunus persica ppa006170m I 0.947
MDP0000871411 Malus x domestica MDP0000871411 I 0.888
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.755
ppa006419m Prunus persica ppa006419m I 0.883
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.932
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.740
mgf001763m Mimulus guttatus mgf001763m I 0.874
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.721
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.822
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.951
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.859
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.971
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.971
29739.m003726 Ricinus communis 29739.m003726 I 0.850
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.942
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.760
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.767
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.893
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.932
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.947
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.869
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.755
29727.m000492 Ricinus communis 29727.m000492 I 0.971
28226.m000878 Ricinus communis 28226.m000878 I 0.755
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.903
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.898
PK20770.1 Cannabis sativa PK20770.1 I 0.961
PK22818.1 Cannabis sativa PK22818.1 I 0.835
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.762
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.752
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.786
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.874
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.816
MDP0000147538 Malus x domestica MDP0000147538 N 0.829
MDP0000149711 Malus x domestica MDP0000149711 N 0.883
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.820
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.816
mgf015309m Mimulus guttatus mgf015309m N 0.899
mgf004534m Mimulus guttatus mgf004534m N 0.898
SB07G027050 Sorghum bicolor Sb07g027050 N 0.757
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.801
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.908
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.786
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.752
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.816
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.922
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.874
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.816
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.796
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.792
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.782