MDP0000497543 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000497543 T57675_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000497543 RRM 32 102
MDP0000497543 RRM 120 189
MDP0000497543 RRM 211 280
MDP0000497543 RRM 314 383

Links

Other RRM family RBPs
Other Malus x domestica RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa002620m Prunus persica ppa002620m N 0.819
mgf004973m Mimulus guttatus mgf004973m N 0.790
mgf004596m Mimulus guttatus mgf004596m N 0.769
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.726
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.815
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.804
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.879
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.751
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.737
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.886
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.754
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.747
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.747
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.740
mgf005294m Mimulus guttatus mgf005294m N 0.779
mgf009542m Mimulus guttatus mgf009542m N 0.801
ppa002618m Prunus persica ppa002618m N 0.819
ppa002607m Prunus persica ppa002607m N 0.911
MDP0000286821 Malus x domestica MDP0000286821 N 0.719
MDP0000283985 Malus x domestica MDP0000283985 N 0.794
MDP0000253709 Malus x domestica MDP0000253709 N 0.961
MDP0000212007 Malus x domestica MDP0000212007 N 0.722
MDP0000156895 Malus x domestica MDP0000156895 N 0.961
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.733
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.872
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.783
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.797
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.719
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.712
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.730
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.854
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.740
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.829
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.865
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.730
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.722
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.706
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.733
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.748
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.740
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.765
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.790
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.779
PK02172.1 Cannabis sativa PK02172.1 N 0.840
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.748
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.733
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.840
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.851
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.829
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.822
30170.m013847 Ricinus communis 30170.m013847 N 0.833
29801.m003152 Ricinus communis 29801.m003152 N 0.858
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.765
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.786
SB06G021850 Sorghum bicolor Sb06g021850 N 0.719
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.833
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.868
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.840
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.861
PK00659.1 Cannabis sativa PK00659.1 N 0.769