XP_002159261.1 (Hydra magnipapillata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 XP_002159261.1 T59051_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.836
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.793
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_002159261.1 RRM 386 450
XP_002159261.1 RRM 494 563

Links

Other RRM family RBPs
Other Hydra magnipapillata RBPs

147 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
orb2 Drosophila melanogaster FBgn0262573 D 0.797
CPEB4 Homo sapiens ENSG00000113742 D 0.862
CPEB2 Homo sapiens ENSG00000137449 D 0.819
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.862
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.833
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.856
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.710
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.862
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.833
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.819
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.807
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.855
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.777
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.713
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.855
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.855
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.814
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.777
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.862
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.777
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.833
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.862
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.819
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.833
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.862
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.819
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.833
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.739
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.862
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.775
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.788
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.819
CPEB4 Sorex araneus ENSSARG00000013389 I 0.848
CPEB2 Sorex araneus ENSSARG00000010559 I 0.725
CPEB3 Sorex araneus ENSSARG00000001994 I 0.827
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.862
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.833
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.790
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.862
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.000
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.819
111676 Helobdella robusta 111676 I 0.778
79994 Helobdella robusta 79994 I 0.000
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.768
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.774
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.841
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.813
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.815
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.820
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.783
Sjc_0029950 Schistosoma japonicum Sjc_0029950 I 0.000
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.777
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.833
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.819
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.793
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.793
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.756
PHUM335520 Pediculus humanus PHUM335520 I 0.796
ISCW010113 Ixodes scapularis ISCW010113 I 0.786
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.746
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.713
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.725
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.775
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.833
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.000
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.763
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.797
GF10140 Drosophila ananassae FBgn0087181 I 0.797
GG15051 Drosophila erecta FBgn0107305 I 0.797
GH16131 Drosophila grimshawi FBgn0123602 I 0.803
GI12400 Drosophila mojavensis FBgn0135157 I 0.797
GL20808 Drosophila persimilis FBgn0158403 I 0.797
GJ12289 Drosophila virilis FBgn0199538 I 0.797
GK17460 Drosophila willistoni FBgn0219459 I 0.797
GE21274 Drosophila yakuba FBgn0238542 I 0.797
ADH10187 Xenopus laevis ADH10187 I 0.862
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.855
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.791
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.819
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.862
CPEB2 Danio rerio ENSDARG00000052604 I 0.710
cpeb3 Danio rerio ENSDARG00000060103 I 0.820
CPEB4 Danio rerio ENSDARG00000060495 I 0.855
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.819
CPEB3 Equus caballus ENSECAG00000000077 I 0.827
CPEB2 Equus caballus ENSECAG00000008722 I 0.819
LOC100058918 Equus caballus ENSECAG00000016921 I 0.862
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.862
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.833
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.755
CPEB3 Homo sapiens ENSG00000107864 I 0.833
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.806
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.783
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.855
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.862
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.819
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.833
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.810
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.826
AAEL012065 Aedes aegypti AAEL012065 I 0.000
AGAP002296 Anopheles gambiae AGAP002296 I 0.770
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.833
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.819
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.862
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.862
CPEB3 Bos taurus ENSBTAG00000015450 I 0.833
CPEB2 Bos taurus ENSBTAG00000019847 I 0.819
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.833
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.819
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.856
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.827
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.819
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.826
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.855
CPEB3 Gallus gallus ENSGALG00000006912 I 0.833
CPEB4 Gallus gallus ENSGALG00000014074 I 0.850
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.862
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.833
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.862
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.833
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.819
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.819
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.850
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.827
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.819
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.862
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.833
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.000
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.862
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.819
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.862
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.819
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.819
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.855
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.833
CPEB2 Gallus gallus ENSGALG00000014516 I 0.819
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.819
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.862
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.833
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.819
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.862
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.833
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.819
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.833
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.850
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.819
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.833
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.833
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.713
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.862
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.819
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.855
69117 Helobdella robusta 69117 N 0.000