CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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APUM1
(
Arabidopsis thaliana
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
AT2G29200-TAIR-G
T24020_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G29200.1-P
PUF
630
664
EIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVY
AT2G29200.1-P
PUF
666
700
EIMPQALVLMTDVFGNYVIQKFFEHGLPPQRRELA
AT2G29200.1-P
PUF
702
736
KLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMV
AT2G29200.1-P
PUF
738
772
ELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFII
AT2G29200.1-P
PUF
774
809
TFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVM
AT2G29200.1-P
PUF
816
844
VSMLAQDQYGNYVVQHVLEHGKPDERTVI
AT2G29200.1-P
PUF
847
881
ELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLV
AT2G29200.1-P
PUF
894
923
LQAMMKDQFANYVVQKVLETCDDQQRELIL
Links
Other
PUF
family RBPs
Other
Arabidopsis thaliana
RBPs
75 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
20338_Multiple
Saccharomyces mikatae
20338_Multiple
N
0.000
20661_YOR091W
Saccharomyces paradoxus
20661_YOR091W
N
0.000
22901_YOR091W
Saccharomyces bayanus
22901_YOR091W
N
0.000
72073
Helobdella robusta
72073
N
0.000
A7TLF2_VANPO
Vanderwaltozyma polyspora
A7TLF2_VANPO
N
0.000
AB07703.1
Alternaria brassicicola
AB07703.1
N
0.000
ACLA_016930
Aspergillus clavatus
CADACLAG00000891
N
0.000
AFUA_5G13930
Aspergillus fumigatus
CADAFUAG00006431
N
0.000
ARB_01723
Arthroderma benhamiae
ARB_01723
N
0.000
ATEG_06133
Aspergillus terreus
CADATEAG00002525
N
0.000
BDBG_01641
Blastomyces dermatitidis
BDBG_01641
N
0.000
BGIBMGA011604
Bombyx mori
BGIBMGA011604
N
0.000
CAGL0J08679g
Candida glabrata
CAGL0J08679g
N
0.000
CC1G_07829
Coprinopsis cinerea
CC1G_07829
N
0.000
DGIL_AUG5s16g7t1
Acyrtosiphon pisum
DGIL_AUG5s16g7t1
N
0.000
ENSCING00000006888
Ciona intestinalis
ENSCING00000006888
N
0.000
estExt_fgenesh1_pm.C_130118
Neurospora tetrasperma
estExt_fgenesh1_pm.C_130118
N
0.000
estExt_fgenesh1_pm.C_180201
Phytophthora capsici
estExt_fgenesh1_pm.C_180201
N
0.000
estExt_Genewise1.C_110154
Neurospora discreta
estExt_Genewise1.C_110154
N
0.000
estExt_Genewise1.C_22051
Cryphonectria parasitica
estExt_Genewise1.C_22051
N
0.000
estExt_Genewise1.C_30385
Mucor circinelloides
estExt_Genewise1.C_30385
N
0.000
estExt_Genewise1.C_60471
Cochliobolus heterostrophus C5
estExt_Genewise1.C_60471
N
0.000
estExt_Genewise1Plus.C_31385
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_31385
N
0.000
e_gw1.19.91.1
Melampsora laricis populina
e_gw1.19.91.1
N
0.000
e_gw1.2.668.1
Sporobolomyces roseus
e_gw1.2.668.1
N
0.000
e_gw1.8.939.1
Pleurotus ostreatus
e_gw1.8.939.1
N
0.000
fgenesh1_pg.C_scaffold_3139000003
Phytophthora capsici
fgenesh1_pg.C_scaffold_3139000003
N
0.000
gwh2.4.391.1
Phanerochaete chrysosporium
gwh2.4.391.1
N
0.000
HCAG_08348
Histoplasma capsulatum
HCAG_08348
N
0.000
KLLA0C13673g
Kluyveromyces lactis
KLLA0C13673g
N
0.000
KLTH0G08162g
Kluyveromyces thermotolerans
KLTH0G08162g
N
0.000
Kwal_2969
Kluyveromyces waltii
Kwal_2969
N
0.000
MCYG_02954
Microsporum canis
MCYG_02954
N
0.000
MGG_07010
Magnaporthe oryzae
MGG_07010
N
0.000
MGYG_00125
Microsporum gypseum
MGYG_00125
N
0.000
NCU01795
Neurospora crassa
NCU01795
N
0.000
NFIA_073040
Neosartorya fischeri
CADNFIAG00007899
N
0.000
PASA_GEN_1200032
Daphnia pulex
PASA_GEN_1200032
N
0.000
Pa_3_8730
Podospora anserina
Pa_3_8730
N
0.000
PGTG_08922
Puccinia graminis
PGTG_08922
N
0.000
PITG_04608
Phytophthora infestans
PITG_04608
N
0.000
SAKL0E09966g
Lachancea kluyveri
SAKL0E09966g
N
0.000
Scas_Contig578.9
Saccharomyces castellii
Scas_Contig578.9
N
0.000
SPPG_00188
Spizellomyces punctatus
SPPG_00188
N
0.000
s_451242
Phytophthora sojae
s_451242
N
0.000
TEQG_08385
Trichophyton equinum
TEQG_08385
N
0.000
TERG_01412
Trichophyton rubrum
TERG_01412
N
0.000
TESG_03135
Trichophyton tonsurans
TESG_03135
N
0.000
TMA46
Saccharomyces cerevisiae
YOR091W
N
0.000
TRV_03417
Trichophyton verrucosum
TRV_03417
N
0.000
ZC3H15
Gasterosteus aculeatus
ENSGACG00000011648
N
0.000
zc3h15
Danio rerio
ENSDARG00000015889
N
0.000
ZC3H15
Oryzias latipes
ENSORLG00000018606
N
0.000
ZC3H15
Takifugu rubripes
ENSTRUG00000004988
N
0.000
ZYRO0C15598g
Zygosaccharomyces rouxii
ZYRO0C15598g
N
0.000