APUM1 (Arabidopsis thaliana)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 AT2G29200-TAIR-G T24020_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT2G29200.1-P PUF 630 664
AT2G29200.1-P PUF 666 700
AT2G29200.1-P PUF 702 736
AT2G29200.1-P PUF 738 772
AT2G29200.1-P PUF 774 809
AT2G29200.1-P PUF 816 844
AT2G29200.1-P PUF 847 881
AT2G29200.1-P PUF 894 923

Links

Other PUF family RBPs
Other Arabidopsis thaliana RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.736
30143.m001162 Ricinus communis 30143.m001162 N 0.783
30143.m001164 Ricinus communis 30143.m001164 N 0.822
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.970
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.956
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.704
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.844
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.808
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.855
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.819
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.722
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.764
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.779
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.771
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.771
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.729
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.724
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.819
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.906
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.888
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.884
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.884
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.754
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.866
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.797
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.736
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.747
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.745
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.717
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.703
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.755
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.726
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.866
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.870
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.876
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.873
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.873
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.866
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.721
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.771
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.774
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.729
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.725
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.830
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.880
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.746
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.830
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.764
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.740
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.779
MDP0000176743 Malus x domestica MDP0000176743 N 0.714
MDP0000191652 Malus x domestica MDP0000191652 N 0.851
MDP0000314338 Malus x domestica MDP0000314338 N 0.819
MDP0000319167 Malus x domestica MDP0000319167 N 0.884
MDP0000776183 Malus x domestica MDP0000776183 N 0.822
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.736
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.859
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.859
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.775
mgf011401m Mimulus guttatus mgf011401m N 0.732
mgf015234m Mimulus guttatus mgf015234m N 0.790
mgf015734m Mimulus guttatus mgf015734m N 0.848
PK00601.1 Cannabis sativa PK00601.1 N 0.822
PK01617.1 Cannabis sativa PK01617.1 N 0.755
PK21390.1 Cannabis sativa PK21390.1 N 0.870
ppa000626m Prunus persica ppa000626m N 0.822
ppa000627m Prunus persica ppa000627m N 0.873
ppa000731m Prunus persica ppa000731m N 0.754
SB03G039600 Sorghum bicolor Sb03g039600 N 0.830
SB04G037410 Sorghum bicolor Sb04g037410 N 0.733
SB09G001090 Sorghum bicolor Sb09g001090 N 0.774
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.981
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.726
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.981
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.985