LOC_Os08g09100 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os08g09100 T45100_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os08g09100.1 RRM 105 174
LOC_Os08g09100.1 RRM 195 266
LOC_Os08g09100.1 RRM 299 363

Links

Other RRM family RBPs
Other Oryza sativa RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29666.m001436 Ricinus communis 29666.m001436 I 0.000
29842.m003612 Ricinus communis 29842.m003612 N 0.744
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.712
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.710
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.000
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.729
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.856
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.995
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.874
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.712
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.726
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.726
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.726
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.726
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.726
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.000
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.000
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.739
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.734
Cucsa.085240 Cucumis sativus Cucsa.085240 N 0.000
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.745
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.736
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.000
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.754
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.749
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.744
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.758
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.832
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.875
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.856
MDP0000223369 Malus x domestica MDP0000223369 N 0.716
MDP0000294628 Malus x domestica MDP0000294628 I 0.702
MDP0000614064 Malus x domestica MDP0000614064 N 0.721
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.725
mgf010468m Mimulus guttatus mgf010468m I 0.745
mgf014417m Mimulus guttatus mgf014417m N 0.702
PK10695.1 Cannabis sativa PK10695.1 I 0.721
PK15181.1 Cannabis sativa PK15181.1 N 0.000
POPTR_0011s14150 Populus trichocarpa POPTR_0011s14150 N 0.000
ppa006577m Prunus persica ppa006577m I 0.712
ppa006617m Prunus persica ppa006617m N 0.000
SB01G016170 Sorghum bicolor Sb01g016170 N 0.720
Sb07g005360 Sorghum bicolor Sb07g005360 N 0.000
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.710