Cucsa.149440 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.149440 T49569_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.149440.1 RRM 55 121
Cucsa.149440.1 RRM 140 210
Cucsa.149440.1 RRM 261 328
Cucsa.149440.2 RRM 55 121
Cucsa.149440.2 RRM 140 210
Cucsa.149440.2 RRM 260 327

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28226.m000878 Ricinus communis 28226.m000878 I 0.716
29727.m000492 Ricinus communis 29727.m000492 I 0.908
29739.m003726 Ricinus communis 29739.m003726 I 0.816
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.854
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.879
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.883
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.721
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.738
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.782
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.754
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.748
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.796
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.922
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.922
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.922
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.820
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.922
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.922
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.922
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.922
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.922
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.917
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.917
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.917
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.830
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.917
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.726
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.825
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.908
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.888
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.816
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.888
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.779
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.796
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.733
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.864
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.903
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.726
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.702
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.721
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.791
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.733
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.782
MDP0000147538 Malus x domestica MDP0000147538 N 0.815
MDP0000149711 Malus x domestica MDP0000149711 N 0.864
MDP0000871411 Malus x domestica MDP0000871411 I 0.864
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.707
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.874
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.782
mgf001763m Mimulus guttatus mgf001763m I 0.864
mgf004534m Mimulus guttatus mgf004534m N 0.893
mgf015309m Mimulus guttatus mgf015309m N 0.855
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.786
PK20770.1 Cannabis sativa PK20770.1 I 0.917
PK22818.1 Cannabis sativa PK22818.1 I 0.801
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.850
ppa006170m Prunus persica ppa006170m I 0.903
ppa006248m Prunus persica ppa006248m I 0.745
ppa006419m Prunus persica ppa006419m I 0.850
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.782
SB07G027050 Sorghum bicolor Sb07g027050 N 0.738
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.796
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.888
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.854
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.893
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.791