Medtr5g008940 (Medicago truncatula)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		Medtr5g008940 T01029_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr5g008940.1 CCCH ZF 235 260
Medtr5g008940.1 RRM 378 438

Links

Other CCCH ZF,RRM family RBPs
Other Medicago truncatula RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.793
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.759
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.793
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.759
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.770
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.770
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.747
PK18074.1 Cannabis sativa PK18074.1 N 0.931
PK20504.1 Cannabis sativa PK20504.1 N 0.701
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.782
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.897
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.770
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.920
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.770
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.920
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.770
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.770
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.759
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.943
MDP0000120462 Malus x domestica MDP0000120462 N 0.782
MDP0000220601 Malus x domestica MDP0000220601 N 0.724
MDP0000906147 Malus x domestica MDP0000906147 N 0.701
MDP0000259773 Malus x domestica MDP0000259773 N 0.701
MDP0000256775 Malus x domestica MDP0000256775 N 0.701
MDP0000243086 Malus x domestica MDP0000243086 N 0.747
MDP0000214614 Malus x domestica MDP0000214614 N 0.701
MDP0000164538 Malus x domestica MDP0000164538 N 0.931
MDP0000120231 Malus x domestica MDP0000120231 N 0.770
MDP0000214403 Malus x domestica MDP0000214403 N 0.793
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.770
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.770
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.770
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.713
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.805
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.782
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.782
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.839
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.793
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.770
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.805
mgf002273m Mimulus guttatus mgf002273m N 0.782
mgf014647m Mimulus guttatus mgf014647m N 0.747
mgf000973m Mimulus guttatus mgf000973m N 0.770
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.782
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.782
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.770
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.782
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.782
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.770
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.713
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.770
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.793
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.805
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.782
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.793
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.724
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.828
ppa002383m Prunus persica ppa002383m N 0.920
ppa002413m Prunus persica ppa002413m N 0.759
ppa003564m Prunus persica ppa003564m N 0.701
ppa023263m Prunus persica ppa023263m N 0.759
30169.m006471 Ricinus communis 30169.m006471 N 0.793
30169.m006472 Ricinus communis 30169.m006472 N 0.851
SB05G001540 Sorghum bicolor Sb05g001540 N 0.736
SB01G036490 Sorghum bicolor Sb01g036490 N 0.770
SB02G043180 Sorghum bicolor Sb02g043180 N 0.770
SB08G001980 Sorghum bicolor Sb08g001980 N 0.747
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.816
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.770
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.770
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.770
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.747
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.770
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.736
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.770