LOC_Os04g08784 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os04g08784 T11169_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os04g08784.1 CCHC ZF 309 326

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.000
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.000
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.000
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.000
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.000
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.000
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.000
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.000
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.000
PK20770.1 Cannabis sativa PK20770.1 I 0.000
PK22818.1 Cannabis sativa PK22818.1 I 0.000
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.000
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.000
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.000
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.000
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.000
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.000
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.000
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.000
MDP0000149711 Malus x domestica MDP0000149711 N 0.000
MDP0000871411 Malus x domestica MDP0000871411 I 0.000
MDP0000147538 Malus x domestica MDP0000147538 N 0.000
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.000
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.000
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.000
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.000
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.000
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.000
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.000
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.000
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.000
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.000
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.000
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.000
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.000
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.000
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.000
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.000
mgf015309m Mimulus guttatus mgf015309m N 0.000
mgf004534m Mimulus guttatus mgf004534m N 0.000
mgf001763m Mimulus guttatus mgf001763m I 0.000
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.000
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.000
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.000
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.000
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.000
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.000
e_gw1.84.182.1 Physcomitrella patens e_gw1.84.182.1 I 0.000
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.000
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.000
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.000
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.000
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.000
ppa006170m Prunus persica ppa006170m I 0.000
ppa006248m Prunus persica ppa006248m I 0.000
ppa006419m Prunus persica ppa006419m I 0.000
28226.m000878 Ricinus communis 28226.m000878 I 0.000
29739.m003726 Ricinus communis 29739.m003726 I 0.000
29727.m000492 Ricinus communis 29727.m000492 I 0.000
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.000
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.000
SB07G027050 Sorghum bicolor Sb07g027050 N 0.000
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.000
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.000
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.000
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.000
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.000