CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUBP1
(
Homo sapiens
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSG00000162613
T18805_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.774
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.774
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.774
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.774
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000294623
KH
102
164
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
ENSP00000294623
KH
187
251
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV
ENSP00000294623
KH
277
339
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEII
ENSP00000294623
KH
378
443
EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLI
ENSP00000359803
KH
102
164
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
ENSP00000359803
KH
187
251
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV
ENSP00000359803
KH
277
339
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEII
ENSP00000359803
KH
378
443
EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLI
ENSP00000359804
KH
102
164
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
ENSP00000359804
KH
187
251
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV
ENSP00000359804
KH
277
339
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEII
ENSP00000359804
KH
378
443
EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLI
ENSP00000359809
KH
101
163
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
ENSP00000359809
KH
186
250
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV
ENSP00000359809
KH
276
338
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEII
ENSP00000359809
KH
377
442
EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLI
ENSP00000378380
KH
102
164
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
ENSP00000378380
KH
187
251
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV
ENSP00000378380
KH
277
339
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEII
ENSP00000378380
KH
378
443
EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLI
ENSP00000389536
KH
123
185
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
ENSP00000389536
KH
208
272
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV
ENSP00000389536
KH
298
360
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEII
ENSP00000389536
KH
399
464
EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLI
ENSP00000402630
KH
122
184
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
ENSP00000402630
KH
207
232
VQEIMIPASKAGLVIGKGGETIKQLQ
Links
Other
KH
family RBPs
Other
Homo sapiens
RBPs
112 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Genemark.9654_g
Serpula lacrymans
Genemark.9654_g
N
0.000
Genemark.697_g
Serpula lacrymans
Genemark.697_g
N
0.000
Genemark.4875_g
Serpula lacrymans
Genemark.4875_g
N
0.000
Genemark.4852_g
Serpula lacrymans
Genemark.4852_g
N
0.000
Genemark.4804_g
Serpula lacrymans
Genemark.4804_g
N
0.000
Genemark.4784_g
Serpula lacrymans
Genemark.4784_g
N
0.000
Genemark.4605_g
Serpula lacrymans
Genemark.4605_g
N
0.000
Genemark.4171_g
Serpula lacrymans
Genemark.4171_g
N
0.000
Genemark.398_g
Serpula lacrymans
Genemark.398_g
N
0.000
Genemark.383_g
Serpula lacrymans
Genemark.383_g
N
0.000
Genemark.3177_g
Serpula lacrymans
Genemark.3177_g
N
0.000
Genemark.291_g
Serpula lacrymans
Genemark.291_g
N
0.000
Genemark.7181_g
Serpula lacrymans
Genemark.7181_g
N
0.000
Genemark.7317_g
Serpula lacrymans
Genemark.7317_g
N
0.000
Genemark.9644_g
Serpula lacrymans
Genemark.9644_g
N
0.000
Genemark.9611_g
Serpula lacrymans
Genemark.9611_g
N
0.000
Genemark.948_g
Serpula lacrymans
Genemark.948_g
N
0.000
Genemark.920_g
Serpula lacrymans
Genemark.920_g
N
0.000
Genemark.9154_g
Serpula lacrymans
Genemark.9154_g
N
0.000
Genemark.8882_g
Serpula lacrymans
Genemark.8882_g
N
0.000
Genemark.8764_g
Serpula lacrymans
Genemark.8764_g
N
0.000
Genemark.8722_g
Serpula lacrymans
Genemark.8722_g
N
0.000
Genemark.8452_g
Serpula lacrymans
Genemark.8452_g
N
0.000
Genemark.8449_g
Serpula lacrymans
Genemark.8449_g
N
0.000
Genemark.7905_g
Serpula lacrymans
Genemark.7905_g
N
0.000
Genemark.2894_g
Serpula lacrymans
Genemark.2894_g
N
0.000
Genemark.2836_g
Serpula lacrymans
Genemark.2836_g
N
0.000
Genemark.11883_g
Serpula lacrymans
Genemark.11883_g
N
0.000
Genemark.11784_g
Serpula lacrymans
Genemark.11784_g
N
0.000
Genemark.11728_g
Serpula lacrymans
Genemark.11728_g
N
0.000
Genemark.114_g
Serpula lacrymans
Genemark.114_g
N
0.000
Genemark.10994_g
Serpula lacrymans
Genemark.10994_g
N
0.000
Genemark.10663_g
Serpula lacrymans
Genemark.10663_g
N
0.000
Genemark.10659_g
Serpula lacrymans
Genemark.10659_g
N
0.000
Genemark.10616_g
Serpula lacrymans
Genemark.10616_g
N
0.000
Genemark.10542_g
Serpula lacrymans
Genemark.10542_g
N
0.000
Genemark.10431_g
Serpula lacrymans
Genemark.10431_g
N
0.000
Genemark.10428_g
Serpula lacrymans
Genemark.10428_g
N
0.000
Genemark.12078_g
Serpula lacrymans
Genemark.12078_g
N
0.000
Genemark.12100_g
Serpula lacrymans
Genemark.12100_g
N
0.000
Genemark.2815_g
Serpula lacrymans
Genemark.2815_g
N
0.000
Genemark.2746_g
Serpula lacrymans
Genemark.2746_g
N
0.000
Genemark.2704_g
Serpula lacrymans
Genemark.2704_g
N
0.000
Genemark.2433_g
Serpula lacrymans
Genemark.2433_g
N
0.000
Genemark.1932_g
Serpula lacrymans
Genemark.1932_g
N
0.000
Genemark.1916_g
Serpula lacrymans
Genemark.1916_g
N
0.000
Genemark.1711_g
Serpula lacrymans
Genemark.1711_g
N
0.000
Genemark.12634_g
Serpula lacrymans
Genemark.12634_g
N
0.000
Genemark.12630_g
Serpula lacrymans
Genemark.12630_g
N
0.000
Genemark.12220_g
Serpula lacrymans
Genemark.12220_g
N
0.000
Genemark.12122_g
Serpula lacrymans
Genemark.12122_g
N
0.000
Genemark.10134_g
Serpula lacrymans
Genemark.10134_g
N
0.000